Nomenclature for Factors of the HLA System
February 2011
Compiled by Steven G. E. Marsh for the WHO Nomenclature Committee for Factors of the HLA System.
Published In:
- Tissue Antigens. 2011 77:613-7
- Human Immunology. 2010 72:674-8
- International Journal of Immunogenetics. 2011 38:357-61
The following sequences have been submitted to the Nomenclature Committee since the January 2011 nomenclature update and, following agreed policy, have been assigned official allele designations. Full details of all sequences will be published in a forthcoming report.
Below are listed the newly assigned sequences (Table 1) and confirmations of previously reported sequences (Table 2). The accession number of each sequence is given and these can be used to retrieve the sequence files from the EMBL, GenBank or DDBJ data libraries. Although accession numbers have been assigned by the data-libraries and most sequences are already available, there is still the possibility that an author may not yet have allowed the sequence to be released; in such a case you will have to contact the submitting author directly. Additional information pertaining to new sequences is often included in the publications describing these alleles; a listing of recent publications that describe new HLA sequences is given in Table 3.
All new and confirmatory sequences should now be submitted directly to the WHO Nomenclature Committee for Factors of the HLA System via the IMGT/HLA Database using the sequence submission tool provided (2). The IMGT/HLA Database may be accessed via the world wide web at : http://ww.ebi.ac.uk/imgt/hla/.
Table 1: New Sequences
Sequence | Cell identification | Accession number | Submitting author |
---|---|---|---|
A*01:01:36 | HG00000814 | HM044921 | Histogenetics, Ossining, USA |
A*01:01:37 | HG00000847 | HQ590395 | Histogenetics, Ossining, USA |
A*01:88 | HG00000816 | HM159290 | Histogenetics, Ossining, USA |
A*01:89 | HG00000838 | HQ590354 | Histogenetics, Ossining, USA |
A*01:90 | HG00000844 | HQ590373 | Histogenetics, Ossining, USA |
A*01:91 | HG00000863 | HQ644346 | Histogenetics, Ossining, USA |
A*01:92 | HG00000866, HG00000867 | HQ644354, HQ590347 | Histogenetics, Ossining, USA |
A*01:93 | HG00000868 | HQ644363 | Histogenetics, Ossining, USA |
A*02:01:57 | HG00000854 | HQ590357 | Histogenetics, Ossining, USA |
A*02:01:58 | HG00000871 | HQ644353 | Histogenetics, Ossining, USA |
A*02:306 | HG00000848 | HQ590370 | Histogenetics, Ossining, USA |
A*02:307 | HG00000850 | HQ590377 | Histogenetics, Ossining, USA |
A*02:308 | HG00000853 | HQ337725 | Histogenetics, Ossining, USA |
A*02:309 | HG00000870 | HQ644357 | Histogenetics, Ossining, USA |
A*02:310 | 222303196807067000 | HQ907952 | Lixin Jiao, Changchun, China |
A*03:01:28 | HG00000845 | HQ590398 | Histogenetics, Ossining, USA |
A*03:119 | HG00000817 | HQ590375 | Histogenetics, Ossining, USA |
A*03:120 | HG00000818 | GU947039 | Histogenetics, Ossining, USA |
A*03:121 | HG00000839 | HQ590364 | Histogenetics, Ossining, USA |
A*03:122 | HG00000842 | HQ590404 | Histogenetics, Ossining, USA |
A*11:103 | HG00000828 | HQ590394 | Histogenetics, Ossining, USA |
A*23:39 | HG00000811 | HM004304 | Histogenetics, Ossining, USA |
A*23:40 | 14161443 | FR796011 | Dominique Masson, La Tronche , France |
A*24:02:46 | HG00000785 | HM004298 | Histogenetics, Ossining, USA |
A*24:02:47 | HG00000802 | HM562305 | Histogenetics, Ossining, USA |
A*24:173 | HG00000803 | HQ590351 | Histogenetics, Ossining, USA |
A*24:174 | HG00000806 | HQ590383 | Histogenetics, Ossining, USA |
A*24:175 | HG00000830 | HQ590361 | Histogenetics, Ossining, USA |
A*24:176 | HG00000832 | HQ590362 | Histogenetics, Ossining, USA |
A*24:177 | HG00000862 | HQ644362 | Histogenetics, Ossining, USA |
A*26:67 | HG00000799 | HM159285 | Histogenetics, Ossining, USA |
A*26:68 | HG00000826 | HQ590380 | Histogenetics, Ossining, USA |
A*29:29 | HG00000824 | HQ590384 | Histogenetics, Ossining, USA |
A*30:52 | HG00000801 | HM159287 | Histogenetics, Ossining, USA |
A*32:01:10 | HG00000789 | HM159288 | Histogenetics, Ossining, USA |
A*32:35 | HG00000819 | HQ590358 | Histogenetics, Ossining, USA |
A*68:76 | HG00000783 | FJ224207 | Histogenetics, Ossining, USA |
A*68:77 | HG00000793 | HM125793 | Histogenetics, Ossining, USA |
A*68:78 | HG00000794 | HQ590349 | Histogenetics, Ossining, USA |
B*07:128 | THAD718227AN | FR822185 | Steven GE Marsh, London, United Kingdom |
B*18:61 | HG00000876 | HQ644380 | Histogenetics, Ossining, USA |
B*18:62 | FRFLY18850 | FR796015 | Dominique Masson, La Tronche , France |
B*35:01:24 | FRFVA40280 | FR796014 | Dominique Masson, La Tronche , France |
B*35:01:25 | INJE-1001122501 | JF263564 | Oh-Joong Kwon, Seoul, South Korea |
B*35:162 | HG00000875 | GQ245722 | Histogenetics, Ossining, USA |
B*38:30 | ALBA728914AN | FR820584 | Steven GE Marsh, London, United Kingdom |
B*44:129 | FRFVA33081 | FR796012 | Dominique Masson, La Tronche , France |
B*44:130 | 60663927 | JF309365 | Antonio Balas, Madrid, Spain |
B*51:113 | FRFGR29607 | FR796013 | Dominique Masson, La Tronche , France |
B*55:51 | ZUKH714951AN | FR820583 | Steven GE Marsh, London, United Kingdom |
C*01:54 | 613770 | FR822203 | Mats Bengtsson, Uppsala, Sweden |
C*04:01:30 | FRFGR25017 | FR714919 | Dominique Masson, La Tronche , France |
C*04:01:31 | FRFLY17588 | FR714921 | Dominique Masson, La Tronche , France |
C*07:01:19 | SZBM1128 | HQ399497 | Zhihui Deng, ShenZhen, China |
C*07:01:20 | FRFGR23533 | FR716511 | Dominique Masson, La Tronche , France |
C*07:02:26 | FRFVA39012 | FR716510 | Dominique Masson, La Tronche , France |
C*12:58 | 12275964 | FR796016 | Dominique Masson, La Tronche , France |
DRB1*03:64 | 60673286 | JF414116 | Antonio Balas, Madrid, Spain |
DRB1*11:107 | 117975 | FR773882 | Peter Horn, Hannover, Germany |
DRB1*12:27 | CB11537214 | JF343564 | Lixing Yan, Hangzhou, China |
DRB1*13:116 | CZ-OL-DNA-15989 | FR821776 | Frantisek Mrazek, Olomouc, Czech Republic |
DRB3*02:02:01:02 | APD | CR788283 | Stephan Beck, London, United Kingdom |
DRB4*01:03:01:03 | SSTO | BX120007 | Stephan Beck, London, United Kingdom |
DQA1*01:02:01:02 | NA14663, NA00576 | AY663411, AY663410 | Maynard Olson, Seattle, USA |
DQA1*01:02:01:03 | NA14660 | AY663395 | Maynard Olson, Seattle, USA |
DQA1*01:02:01:04 | NA14663 | AY663413 | Maynard Olson, Seattle, USA |
DQA1*01:03:01:02 | NA03715 | AY663415 | Maynard Olson, Seattle, USA |
DQA1*01:04:01:02 | NA04535 | AY663408 | Maynard Olson, Seattle, USA |
DQA1*05:01:01:02 | NA01018, NA10923 | AY663399, AY663407 | Maynard Olson, Seattle, USA |
DQA1*05:01:01:02 | COX | AL731683, AL928759 | Stephan Beck, London, United Kingdom |
DQA1*05:01:01:02 | REE GD, BRO, LJ, VAVY |
AY375939, AY375940, AY375941 | M Luisa Ashdown, Victoria, Australia |
DQA1*05:05:01:02 | NA14661 | AY663394 | Maynard Olson, Seattle, USA |
DQA1*05:05:01:03 | NA04535 | AY663409 | Maynard Olson, Seattle, USA |
DQA1*05:11 | NA01960 | AY663397 | Maynard Olson, Seattle, USA |
DQB1*03:01:01:02 | NA14661 | AY663394 | Maynard Olson, Seattle, USA |
DQB1*03:01:01:03 | NA01960, NA00576 | AY663397, AY663412 | Maynard Olson, Seattle, USA |
DQB1*03:03:02:02 | NA10540 | AY663404 | Maynard Olson, Seattle, USA |
DQB1*03:03:02:03 | NA00576 | AY750010 | Maynard Olson, Seattle, USA |
DQB1*05:01:01:02 | NA14660 | AY663396 | Maynard Olson, Seattle, USA |
DQB1*05:03:01:02 | NA04535 | AY663408 | Maynard Olson, Seattle, USA |
DPA1*01:03:01:02 | PGF, DBB |
AL645931, CR762479 | Stephan Beck, London, United Kingdom |
DPA1*01:03:01:03 | COX | AL662824 | Stephan Beck, London, United Kingdom |
DPA1*01:03:01:04 | SSTO | BX120009 | Stephan Beck, London, United Kingdom |
DPA1*01:03:01:05 | APD, MCF |
CR759904, CR759795 | Stephan Beck, London, United Kingdom |
DPB1*04:01:01:02 | DBB | CR762479 | Stephan Beck, London, United Kingdom |
DPB1*04:02:01:02 | MCF | CR759795 | Stephan Beck, London, United Kingdom |
MICA*008:01:02 | SSTO | BX119958 | Stephan Beck, London, United Kingdom |
TAP1*01:01:01:02 | COX | AL671681 | Stephan Beck, London, United Kingdom |
TAP1*01:01:01:03 | DBB | CR753889 | Stephan Beck, London, United Kingdom |
TAP1*01:01:01:04 | MANN, QBL |
BX927138, AL935043 | Stephan Beck, London, United Kingdom |
TAP1*01:01:01:05 | PGF | AL669918 | Stephan Beck, London, United Kingdom |
TAP1*06:01 | SSTO | BX088556 | Stephan Beck, London, United Kingdom |
TAP2*01:01:02 | COX | AL671681 | Stephan Beck, London, United Kingdom |
TAP2*01:01:03:01 | PGF | AL669918 | Stephan Beck, London, United Kingdom |
TAP2*01:01:03:02 | MANN | CT009500, BX927138 | Stephan Beck, London, United Kingdom |
TAP2*01:01:03:03 | QBL | AL935043 | Stephan Beck, London, United Kingdom |
TAP2*01:04 | MCF | CT009502 | Stephan Beck, London, United Kingdom |
TAP2*02:01:02:01 | DBB | CR788227, CR753889 | Stephan Beck, London, United Kingdom |
TAP2*02:01:02:02 | APD | CR762476 | Stephan Beck, London, United Kingdom |
TAP2*02:01:02:03 | SSTO | BX682530 | Stephan Beck, London, United Kingdom |
Table 2: Confirmatory Sequences
Sequence | Cell identification | Accession number | Submitting author |
---|---|---|---|
A*01:01:33 | HG00000846 | HQ590382 | Histogenetics, Ossining, USA |
A*01:25 | HG00000864 | GQ180318 | Histogenetics, Ossining, USA |
A*01:40 | HG00000815 | HQ590396 | Histogenetics, Ossining, USA |
A*01:51 | HG00000865 | HQ644356 | Histogenetics, Ossining, USA |
A*02:01:22 | HG00000820 | GQ240519 | Histogenetics, Ossining, USA |
A*02:01:24 | HG00000790 | HQ590389 | Histogenetics, Ossining, USA |
A*02:05:04 | HG00000869 | HQ644364 | Histogenetics, Ossining, USA |
A*02:101:02 | HG00000851 | HQ590387 | Histogenetics, Ossining, USA |
A*02:183 | HG00000821, HG00000822 | HQ590376, HQ590365 | Histogenetics, Ossining, USA |
A*02:213 | HG00000872 | HQ590346 | Histogenetics, Ossining, USA |
A*02:228 | HG00000849 | HQ590402 | Histogenetics, Ossining, USA |
A*02:242 | HG00000791 | GU590954 | Histogenetics, Ossining, USA |
A*03:01:19 | HG00000843 | HQ590381 | Histogenetics, Ossining, USA |
A*03:50 | HG00000788 | HM594752 | Histogenetics, Ossining, USA |
A*03:88 | HG00000795, HG00000796 | HQ590393, HM044922 | Histogenetics, Ossining, USA |
A*11:01:15 | HG00000797 | HQ230569 | Histogenetics, Ossining, USA |
A*11:44 | HG00000782 | GU551799 | Histogenetics, Ossining, USA |
A*11:47 | HG00000779, HG00000780, HG00000781 | HM362809, GQ240550, HM467471 | Histogenetics, Ossining, USA |
A*23:31 | HG00000831 | HQ590399 | Histogenetics, Ossining, USA |
A*24:02:22 | HG00000837 | HQ590353 | Histogenetics, Ossining, USA |
A*24:02:35 | HG00000804 | HQ590345 | Histogenetics, Ossining, USA |
A*25:11 | HG00000860 | HQ644366 | Histogenetics, Ossining, USA |
A*26:47 | HG00000827 | HQ590391 | Histogenetics, Ossining, USA |
A*30:29 | HG00000829 | HQ590392 | Histogenetics, Ossining, USA |
A*31:27 | HG00000776, HG00000777 | HM362797, HQ590390 | Histogenetics, Ossining, USA |
A*31:39 | HG00000823 | HQ226088 | Histogenetics, Ossining, USA |
A*31:41 | 1-10505 | JF313779 | Carmen Alaez, Mexico, Mexico |
A*32:06 | BY00802 | JF323031 | Carolyn K Hurley, Washington DC, USA |
A*33:01:03 | HG00000825 | HQ590401 | Histogenetics, Ossining, USA |
A*68:60 | HG00000859 | HQ644345 | Histogenetics, Ossining, USA |
B*08:03 | HG00000877 | HQ590448 | Histogenetics, Ossining, USA |
B*18:03 | CS00070 | JF330421 | Kai Cao, Los Angeles, USA |
B*27:47 | HG00000874 | HQ590405 | Histogenetics, Ossining, USA |
B*39:13:01 | CS00071 | JF346658 | Kai Cao, Los Angeles, USA |
B*40:64 | CS00069 | JF289178 | Kai Cao, Los Angeles, USA |
C*01:16 | BY00796 | HQ912947 | Carolyn K Hurley, Washington DC, USA |
C*02:18 | BY00795 | HQ912946 | Carolyn K Hurley, Washington DC, USA |
C*04:10 | BY00803 | JF323032 | Carolyn K Hurley, Washington DC, USA |
C*04:27 | BY00794 | HQ912945 | Carolyn K Hurley, Washington DC, USA |
C*06:11 | NT01171 | HQ189134 | Carolyn K Hurley, Washington DC, USA |
C*06:15 | BY00797 | HQ912948 | Carolyn K Hurley, Washington DC, USA |
C*06:30 | FRFGR26076 | FR693367 | Dominique Masson, La Tronche , France |
C*07:153 | 14221390 | FR796017 | Dominique Masson, La Tronche , France |
C*08:05 | NT01202 | HQ912952 | Carolyn K Hurley, Washington DC, USA |
C*08:43 | 51205 | FR821689 | Jane Rowlands, Pontyclun, United Kingdom |
C*12:05 | BY00800 | HQ912951 | Carolyn K Hurley, Washington DC, USA |
C*15:19 | BY00798 | HQ912949 | Carolyn K Hurley, Washington DC, USA |
C*18:03 | BY00799 | HQ912950 | Carolyn K Hurley, Washington DC, USA |
DRB1*13:40 | BY00801 | JF323030 | Carolyn K Hurley, Washington DC, USA |
DRB1*13:61:02 | FRFGR24539 | FR796018 | Dominique Masson, La Tronche , France |
DRB1*14:04 | CS00067 | JF275850 | Kai Cao, Los Angeles, USA |
DRB1*15:03:01:01 | CS00066 | JF275849 | Kai Cao, Los Angeles, USA |
DRB1*15:06 | CS00068 | JF275851 | Kai Cao, Los Angeles, USA |
DRB4*01:01:01:01 | MANN | BX927235 | Stephan Beck, London, United Kingdom |
DRB4*01:03:01:01 | MCF | CR788250 | Stephan Beck, London, United Kingdom |
DRB5*01:01:01 | PGF | AL713966 | Stephan Beck, London, United Kingdom |
DQA1*01:01:02 | NA01018 | AY663400 | Maynard Olson, Seattle, USA |
DQA1*01:02:01:01 | NA10923 | AY663406 | Maynard Olson, Seattle, USA |
DQA1*01:02:01:01 | PGF | AL662789 | Stephan Beck, London, United Kingdom |
DQA1*01:03:01:01 | NA03715 | AY663414 | Maynard Olson, Seattle, USA |
DQA1*01:04:01:01 | NA10540 | AY663405 | Maynard Olson, Seattle, USA |
DQA1*01:05 | NA14660 | AY663396 | Maynard Olson, Seattle, USA |
DQA1*02:01 | DBB, MANN |
CR753309, CR753835 | Stephan Beck, London, United Kingdom |
DQA1*03:01:01 | NA01960 | AY663398 | Maynard Olson, Seattle, USA |
DQA1*03:01:01 | SSTO | BX248406 | Stephan Beck, London, United Kingdom |
DQA1*03:02 | NA10540 | AY663404 | Maynard Olson, Seattle, USA |
DQA1*03:03 | NA14661 | AY663393 | Maynard Olson, Seattle, USA |
DQA1*03:03 | MCF | CR933859 | Stephan Beck, London, United Kingdom |
DQA1*05:03 | AMALA, LZL |
AY375942, AY375943 | M Luisa Ashdown, Victoria, Australia |
DQA1*05:05:01:01 | NA00576 | AY663412 | Maynard Olson, Seattle, USA |
DQA1*05:05:01:01 | JBUSH, BM21 |
AY375947, AY375948 | M Luisa Ashdown, Victoria, Australia |
DQB1*02:01:01 | NA01018, NA10923 | AY663399, AY663407 | Maynard Olson, Seattle, USA |
DQB1*02:01:01 | QBL, COX | AL935026, AL731683. | Stephan Beck, London, United Kingdom |
DQB1*02:01:04 | 59569 | FR798950 | David Smillie, Sheffield, United Kingdom |
DQB1*02:02 | MANN | BX927168 | Stephan Beck, London, United Kingdom |
DQB1*03:01:01:01 | NA14661, NA04535 | AY663393, AY663409 | Maynard Olson, Seattle, USA |
DQB1*03:01:01:01 | MCF | CR933859 | Stephan Beck, London, United Kingdom |
DQB1*03:02:01 | NA01960 | AY663398 | Maynard Olson, Seattle, USA |
DQB1*03:03:02:01 | DBB | CR753846 | Stephan Beck, London, United Kingdom |
DQB1*03:05:01 | SSTO | BX248406 | Stephan Beck, London, United Kingdom |
DQB1*03:19 | HP44215, SW44343 |
AM400970 | Stephine Jones, Manchester, United Kingdom |
DQB1*05:01:01:01 | NA01018 | AY663400 | Maynard Olson, Seattle, USA |
DQB1*05:03:01:01 | NA10540 | AY663405 | Maynard Olson, Seattle, USA |
DQB1*06:01:01 | NA03715 | AY663414 | Maynard Olson, Seattle, USA |
DQB1*06:02:01 | NA14660, NA10923, NA14663 | AY663395, AY663406, AY663411 | Maynard Olson, Seattle, USA |
DQB1*06:02:01 | PGF | AL662789 | Stephan Beck, London, United Kingdom |
DQB1*06:03:01 | NA03715 | AY663415 | Maynard Olson, Seattle, USA |
DQB1*06:09 | NA14663 | AY663413 | Maynard Olson, Seattle, USA |
DQB1*06:11:02 | BY00793 | HQ912944 | Carolyn K Hurley, Washington DC, USA |
DQB1*06:33 | BY00792 | JF323033 | Carolyn K Hurley, Washington DC, USA |
DPA1*01:03:01:01 | QBL, MANN |
AL805913, CR847849 | Stephan Beck, London, United Kingdom |
DPB1*02:01:02 | MANN | CR847849 | Stephan Beck, London, United Kingdom |
DPB1*02:02 | QBL | AL805913, AL845446 | Stephan Beck, London, United Kingdom |
DPB1*03:01:01 | COX | AL662824 | Stephan Beck, London, United Kingdom |
DPB1*04:01:01:01 | PGF, SSTO |
AL645931, BX120009 | Stephan Beck, London, United Kingdom |
DPB1*04:02:01:01 | APD | CR759904 | Stephan Beck, London, United Kingdom |
MICA*004 | MOU | CR318637 | Stephan Beck, London, United Kingdom |
TAP1*01:01:01:01 | APD, MCF |
CR762476, CT009502, CR933844 | Stephan Beck, London, United Kingdom |
Table 3: Recently Published Sequences
Sequence | References |
---|---|
A*11:78N | (3) |
B*35:151 | (4) |
B*40:128 | (5) |
B*52:11 | (6) |
B*56:31 | (7) |
C*03:93 | (8) |
DRB1*03:56 | (9) |
DRB1*03:57 | (9) |
DRB1*04:91 | (10) |
DRB1*07:18 | (10) |
DRB1*11:01:12 | (10) |
DRB1*11:04:06 | (9) |
DRB1*12:02:05 | (10) |
DRB1*12:22 | (10) |
DRB1*12:23 | (10) |
DRB1*13:02:04 | (9) |
DRB1*13:100 | (10) |
DRB1*13:102 | (9) |
DRB1*13:103 | (9) |
DRB1*14:12:02 | (9) |
DRB1*15:45 | (10) |
DRB1*15:46 | (10) |
MICA*030 | (11) |
References:
- Marsh SGE, Albert ED, Bodmer WF, et al. Nomenclature for Factors of the HLA system, 2010. Tissue Antigens. 2010 75:291-455.
- Robinson J, Malik A, Parham P, Bodmer JG, Marsh SGE. IMGT/HLA database--a sequence database for the human major histocompatibility complex. Tissue Antigens. 2000; 55: 280-7.
- Zhu FM, Wang W, He YM, Lv HJ, Yan LX. Identification of a new HLA-A*11:78N allele by polymerase chain reaction sequence-based typing. Tissue Antigens. 2011; 77: 257-8.
- Lind C, Busacco A, Huynh A, Monos D, Coppage M. Identification of a novel HLA-B*35 variant allele, B*35:151. Tissue Antigens. 2011; 77: 258-9.
- Zhu FM, Zhang W, Wang W, Lv HJ, Yan LX. Characterization of a novel HLA allele, HLA-B*40:128, in a Chinese individual. Tissue Antigens. 2011; 77: 260-1.
- Liu XZ, Li XF, Zhang X, Zhang KL, Li JP. A new human leukocyte antigen-B allele, HLA-B*52:11. Tissue Antigens. 2011; 77: 261-2.
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- Furst D, Solgi G, Recker K, Mytilineos D, Schrezenmeier H, Mytilineos J. Sequence-based typing of major histocompatibility complex class I chain-related gene A alleles by use of exons 2-5 information. Tissue Antigens. 2011; 77: 201-5.