# file: Y_gen.txt # date: 2024-04-10 # version: IPD-IMGT/HLA 3.56.0 # origin: https://github.com/ANHIG/IMGTHLA/blob/Latest/alignments/Y_gen.txt # repository: https://raw.githubusercontent.com/ANHIG/IMGTHLA/Latest/alignments/Y_gen.txt # author: Steven G. E. Marsh (steven.marsh@ucl.ac.uk) gDNA -1 | Y*01:01 * | ATGGCGGTC GTGGCGCCCC GAACCCTCCT CCTGCTACTC TCGGGGGCCC TGGCCCTGAC CCAGACCTGG GCGG | GTGAGT GCGGGGTCGG GAGGGAAACC Y*02:01 G | --------- ---------- ---------- ---------- ---------- ---------- ---------- ---- | ------ ---------- ---------- Y*03:01 * | --------- ---------- ---------- ---------- ---------- ---------- ---------- ---- | ------ ---------- ---------- gDNA 100 | Y*01:01 GCCTCTGCGA GGAGGAGCGG GCGGCCCGCC CGGCGGGGGC GCAGGACCGG GGGAGCCGCG CAGGGAGGAG GGTCGGGCGG GTCTCAACCC CTCCTCGCCC Y*02:01 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- Y*03:01 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- gDNA 200 | Y*01:01 TCAG | GCTCCC ACTCCATGAG GTATTTCTCC ACATCCGTGT CCCGGCCCGG CAGTGGAGAG CCCCGCTTCA TCGCAGTGGG CTACGTGGAC GACACGCAGT Y*02:01 ---- | ------ ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- Y*03:01 ---- | ------ ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- gDNA 300 | Y*01:01 TCGTGCGGTT CGACAGCGAC GCCGCGAGCC AGAGGATGGA GCCGCGGGCG CCGTGGATGG AGCAGGAGGA GCCGGAGTAT TGGGACCGGC AGACACAGAT Y*02:01 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- -----G---- Y*03:01 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- gDNA 400 | Y*01:01 CTCCAAGACC AACGCACAGA TTGACCTAGA GAGCCTGCGG ATCGCGCTCC GCTACTACAA CCAGAGCGAG GCCG | GTGAGT GACCCCGGCC CGGGGCGCAG Y*02:01 ---------- ---------- ---------- ---------- ---------- ---------- ---------- -A-- | ------ ---------- ---------- Y*03:01 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---- | ------ ---------- ---------- gDNA 500 | Y*01:01 GTCACGACCC CTCATCCCCC ACCGACGGGC CGGGTCGCCC ACAGTCTCCG GGTCCGAGAT CCACCCCGAA GCCGCGGGAC CCCGAGACCC TTGACCCGGG Y*02:01 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- Y*03:01 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- gDNA 600 | Y*01:01 AGAGGCCCAG GCGCCTTTAC CCGGTTTCAT TTTCAGTTTA AGCCAAAAAT CCCCGCGGGT TGGTCGGGGC GGGGCGGGGC TCGGGGAACA GGGCTGACCG Y*02:01 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ------G--T ---------- Y*03:01 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- gDNA 700 | Y*01:01 CGGGGGTGGG GCCAG | GTTCT CACACCATCC AGAGGATGTC TGGCTGCGAC GTGGGGTCGG ACGGGCGCTT CCTCCGCGGG TACCGGCAGG ACGCCTACGA Y*02:01 T----..... ..... | ..... .......... .......... .......... .......... .......... .......... .......... .......... Y*03:01 ---------- ----- | ----- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- gDNA 800 | Y*01:01 CGGCAAGGAT TACATCGCCC TGAACGAGGA CCTGCGCTCT TGGACCGCGG CGGACATGGC GGCTCAGATC ACCCAGCGCA AGTGGGAGGC GGCCCGTCAG Y*02:01 .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... Y*03:01 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- gDNA 900 | Y*01:01 GCGGAGCAGT TGAGAGCCTA CCTGGAGGGC GAGTGCATGG AGTGGCTCCG CAGATACCTG GAGAACGGGA AGGAGACGCT GCAGCGCACG G | GTACCAGGG Y*02:01 .......... .......... .......... .......... .......... .......... .......... .......... .......... . | ......... Y*03:01 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- - | --------- gDNA 1000 | Y*01:01 GCCACGGGGC GCCTCCCTGA TCGCCTGTAG ATCTCCCGGG CTGGCCTCCC ACAAGGAGGG GAGACAATTG GGACCAACAC TAGAATATCG CCCTCCCTCT Y*02:01 .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... Y*03:01 ---------- ---------- ---------- ---------- ---------- ---------- ------.... .......... .......... .......... gDNA 1100 | Y*01:01 GGTCCTGAGG GAGAGGAATC CTCCTGGGTT CCAGATCCTG TACCAGAGAG TGACTCTGAG GTTCCGCCCT GCTCTCTGAC ACAATTAAGG GATAAAATCT Y*02:01 .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... Y*03:01 .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... gDNA 1200 | Y*01:01 CTGAAGGAAT GCCGGAAAGA CGATCCCTCG AATACTGATG AGTGGTTCCC TTTGACACAC ACCGGCAGCA GCCTTGGGCC CGTGACTTTT CCTCTCAGGC Y*02:01 .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... Y*03:01 .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... gDNA 1300 | Y*01:01 CTTGTTCTCT GCTTCACACT CAATGTGTGT GGGGGTCTGA GTCCAGCACT TCTGAGTCCC TCAGCCTCCA CTCAGGTCAG GACCAGAAGT CGCTGTTCCC Y*02:01 .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... Y*03:01 .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... gDNA 1400 | Y*01:01 TCTTCAGGGA CTAGAATTTT CCACGGAATA GGAGATTATC CCAGGTGCCT GTGTCCAGGC TGGTGTCTGG GTTCTGTGCT CCCTTCCCCA TCCCAGGTGT Y*02:01 .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... Y*03:01 .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... gDNA 1500 | Y*01:01 CCTGTCCATT CTCAAGATAG CCACATGTGT GCTGGAGGAG TGTCCCATGA CAGATGCAAA ATGCCTGAAT GTTCTGACTC TTCCCGACAG | ACGCCCCC.. Y*02:01 .......... .......... .......... .......... ..-------- ---------- ---------- T--------- ------T--- | --C-----CC Y*03:01 .......... .......... .......... .......... .......... .......... .......... .......... .......... | --C-----CC gDNA 1598 | Y*01:01 AAGACGCATA TGACTCACCA CGCTGTCTCT GACAATGAGG CCACCCTGAG GTGCTGAGCC CTGAGCTTCT ACCCTGCGGA GATCACACTG ACCTGGCAGC Y*02:01 -----A---- ----C----- -C-CA----- ---C------ ---------- ------G--- ---------- ---------- ---------- ---------- Y*03:01 -----A---- ----C----- -C-CA----- ---C------ ---------- ------G--- ---------- ---------- ---------- ---------- gDNA 1698 | Y*01:01 GGGATGGGGA GGACCAGACC CAGGACACGG AGCTCGTGGA GACCAGGCCT GCAGGGGATG GAATCTTCCA GAAGTGGGCG GCTGTGGTGG TGCCTTCTGG Y*02:01 ---------- ---------- ---------- ---------- ---------- ---------- ---C------ ---------- T--------- ---------- Y*03:01 ---------- ---------- ---------- ---------- ---------- ---------- ---C------ ---------- T--------- ---------- gDNA 1798 | Y*01:01 AGAGGAGCAG AGATACACCT GCCATGTGCA GCATGAGGGT CTGCCCAAGC CCCTCACCCT GAGATGGG | GT AAGGAGGGAG ATGGGGGTGT CATGTCTTTT Y*02:01 -C-------- ---------- ---------- ---------- ---------- ---------- -------- | -- ---------- ---------- ---------- Y*03:01 -C-------- ---------- ---------- ---------- ---------- ---------- -------- | -- ---------- ---------- ---------- gDNA 1898 | Y*01:01 AGGGAAAGCA GGAGCCTCTC TGGAGACCTT TAGCAGGGTC AGGGCCCCTC ACCTTCCCCT CTTTTCCCAG | AGCCGTCTTC CCATCCCACC ATCCCCATCG Y*02:01 ---------- ---------- -------G-- ---------- ---------- ---------- ---------- | ---------- ---G------ ---------- Y*03:01 ---------- ---------- -------G-- ---------- ---------- ---------- ---------- | ---------- ---G------ ---------- gDNA 1998 | Y*01:01 TGGGCATCCT TGCTGGCCTG GTTCTCTTTG GAGCTGTGAT CGCTGGAGCT GTGGTCGCTG CTGTGATGTG GAGGAGGAAG AGCTCAG | GTG GGGAAGGGAT Y*02:01 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ------- | --- --------G- Y*03:01 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ------- | --- --------G- gDNA 2098 | Y*01:01 GAAGGGTGGG TCTGAGATTT CTTGTCTCAC TGAGGGTTCC AAGACCCAGG TAGAAGTGTG CCCTGCCTCG TTACTGGGAA GCACCATCCA CAATTATGGG Y*02:01 ---------- ---------- ---------- ---------- ---------- -----A---- ---------- ---------- ---------- ---------- Y*03:01 ---------- ---------- ---------- ---------- ---------- -----A---- ---------- ---------- ---------- ---------- gDNA 2198 | Y*01:01 CCTACCCAGC CTGGGCCCTG TGTGCCAGCA CTTACTCTTT TGTAAAGCAC CTGTTAAAAT GAAGGACAGA TTTATCACCT TGATTACAGC GGTGATGGGA Y*02:01 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- -------G-- ---------- Y*03:01 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- -------G-- ---------- gDNA 2298 | Y*01:01 CCTGATCCCA GCAGTCACAA GTCACAGGGG AAGGTCCCTG AGGACCTTCA GGAGGGCGGT TGGTCCAGGA CCCACACCTG CTTTCTTCAT GTTTCCTGAT Y*02:01 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- Y*03:01 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- gDNA 2398 | Y*01:01 CCCGCCCTGG GTCTGCAGTC ACACATTTCT GGAAACTTCT CTGGGGTCCA AGACTACGAG GTTCCTCTAG GACCTTAAGG CCCTGGCTCC TTTCTGGTAT Y*02:01 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- Y*03:01 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- gDNA 2498 | Y*01:01 CTCACAGGAC ATTTTCTTCC CACAG | ATAGA AAAGGAGGGA GCTACTCTCA GGCTGCAA | GT AAGTATGAAG GAGGATGATC CAAGAAATCA CTGGGATATT Y*02:01 ---------- ---------- ----- | ----- ---------- ---------- -------- | -- ---------- ---------- ---------- ---------- Y*03:01 ---------- ---------- ----- | ----- ---------- ---------- -------- | -- ---------- ---------- ---------- ---------- gDNA 2598 | Y*01:01 GTGTTTGAGA GCCCACTGGG GAGCTCACCC ACCCCACAAT TCCTCCTCTA TCCACATCTT CTGTGGGATC TGACCAGGTT CTGTTTTTGT TCTACCCCAG Y*02:01 ---------- --A--T---- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- Y*03:01 ---------- --A--T---- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- gDNA 2698 | Y*01:01 | GCAGTGACAT TGCCCAGGGC TCTGATGTGT CTCTCACAGC TTGTAAAG | GT GAGAGCCTGG AGGGCCTGAT GTGTGTTGGG TGTTGGGAGG AACAGTGGAC Y*02:01 | ---------G ---------- ---------- ---------- -------- | -- ---------C ---------- ---------- ---------- ---------- Y*03:01 | ---------G ---------- ---------- ---------- -------- | -- ---------C ---------- ---------- ---------- ---------- gDNA 2798 | Y*01:01 ACAGCTGTGC TATGGGGTTT CTTTGCATTG GATGTATTGA GCATGCGATG GGCTGTTTAA AGTGTGACCC CTCACTGTGA CGGATATGAA TTTCTTCATG Y*02:01 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- Y*03:01 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- gDNA 2898 | Y*01:01 AATATTTTTT CTATAG | TGTG A | ********* ********** ********** ********** ********** ********** ********** ********** Y*02:01 ---------- ------ | ---- - | GACAGCTGC CTTGTGTGGG ACTGAGAGGC AAGAGTTGTT CCCGCCTTCT CTTTGTGACT TGAAGAACCC TGAATTTCTT Y*03:01 ---------- ------ | ---- - | ********* ********** ********** ********** ********** ********** ********** ********** gDNA 2998 | Y*01:01 ********** ********** ********** ********** ********** ********** ********** ********** ********** * Y*02:01 TCTGCAAAGG CACCTGCATG TGTCTGTGTT CCTGTAGGCA CAGTGTGAGG AGGTAGGGAG ACCATCCCAC TCCCATGTCC ACCCTGACCC T Y*03:01 ********** ********** ********** ********** ********** ********** ********** ********** ********** * Please see http://hla.alleles.org/terms.html for terms of use.