HLADB-2.28.0-January 2010 HLA-P Genomic Nucleotide Sequence Alignments Sequences Aligned: 15 January 2010 Steven GE Marsh, Anthony Nolan Research Institute. gDNA 1 | P*01010101 GTAATTAAAT TCTGTACAGG CTCCTGGTTG CAATATACGG TAATACATTG TGCTTTGTAT TGAGATGTCC TGGACTCGCA CACACAAACT CAGAGCTATG P*01010102 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- P*02010101 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- P*02010102 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- gDNA 101 | P*01010101 AAATAAAGAT ACTGTAAAAA TACAACAGAC CAGAGTCACA GATACACAGT CTAGGAAAGT AAAACTTCAC TTTGTGAGTC TAATTGCAAT GCGTTTAGAC P*01010102 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- P*02010101 ---------- ---------- ---------- ---------- ---------- --G------- ---------- ---------- ---------- ---------- P*02010102 ---------- ---------- ---------- ---------- ---------- --G------- ---------- ---------- ---------- ---------- gDNA 201 | P*01010101 ATATTTATAT ATAGTGGGGC CAAAAATCAT CTCTTTTACA AATTAGA.TT CGTGACCATT CAGGGGCTAC CAAGATTGTG CTACCCACTG TAGCACAATC P*01010102 ---------- ---------- ---------- ---------- -------.-- ---------- ---------- ---------- ---------- ---------- P*02010101 ---------- ---A------ ---------- ---------- -------.-- ---------- ---------- ---------- ---------- ---------- P*02010102 ---------- ---A------ ---------- ---------- -------.-- ---------- ---------- ---------- ---------- ---------- gDNA 300 | P*01010101 GGAGACCCAC CCCGAGGCTG CGAGACTCGT GGAGACCCTC GACACAAGAA CCCCAGGTGC CTATACCCGA TTCCATTTTC AGTTCAGGCC CAAATCCCCG P*01010102 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ------A--- P*02010101 ---------- G--------- --G------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- P*02010102 ---------- G--------- --G------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- gDNA 400 | P*01010101 GGGGATTGAT CGGGGCAGAG GAGGAGCTCA GTGGCTGAGG CTCAGTGGCT GAGGCTGACC GCGGGCTTGG GGACAG | GGTC TCCCACCTCC AGTGGATACA P*01010102 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ------ | ---- ---------- ---------- P*02010101 ---------- ---------- ---------- ---------- --G-...... ........-- ---------- ------ | ---- ---------- ---------- P*02010102 ---------- ---------- ---------- ---------- --G-...... ........-- ---------- ------ | ---- ---------- ---------- gDNA 500 | P*01010101 CAGCTGCGAC CTGGACCCGG ACCGGAGCCT CTTCGCGCGG GGATGAACAT ACCCTACGAT GGCGCCAGTT ACCTCGTCCT AAACCAGGAA CTGCTCTCTT P*01010102 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- P*02010101 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- P*02010102 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- gDNA 600 | P*01010101 GGACCGCAGC GGACAAGGCG GCTCAGATGT TTTGGAGGAG GAACATGCAG AGCTGCTCAA AACCTACCTG CCCGGAAGGT GGGCGGAGTG GCTCAGCAAA P*01010102 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- P*02010101 ---------- ---A------ ---------- -C-------- ---------- ---------- ---------- --G------- ---------- ---------- P*02010102 ---------- ---A------ ---------- ---------- ---------- ---------- ---------- --G------- ---------- ---------- gDNA 700 | P*01010101 GGCCTTAAGA ATGAG...GA GAGTCTGCAA TGCGCAG | GTA CCAGAGGCCA CGGGGCGCTT CCCTGATCTC CTGCAGATAT CCCTGAGCCA CCTTCCAAAA P*01010102 ---------- -----...-- ---------- ------- | --- ---------- ---------- ---------- ---------- ---------- ---------- P*02010101 ---------- -----AAG-- ---G------ ------- | --- ---------- ----T---C- ---------- ---------- ---------- ---------- P*02010102 ---------- -----AAG-- ---G------ ------- | --- ---------- ----T---C- ---------- ---------- ---------- ---------- gDNA 797 | P*01010101 GAAGGG.AGG AAAATGGGAC CAACGCTAAA ATATCCCTCT CCCTCTTGTC CTGAGGCAGA AGAGTCCTCC TGGGTTTCTA AATCCTATAC CAGAGAGTGA P*01010102 ------.--- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- P*02010101 ------G--- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- P*02010102 ------G--- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- gDNA 896 | P*01010101 CTGAGGGCCC GCCCTGCACT CTGGGACAAT TAACGGATGA AGTCTCTGCG GGAAAGGAGG GGAAGACAAT CCCTGGAATA CTGATACGCG GTCCCCTTTG P*01010102 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- P*02010101 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- P*02010102 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- --A------- gDNA 996 | P*01010101 ACCCCCCAGC AGCCTTGGGC ACCAGGAATT TTCCTCTCAG GCCTTGTTCT CTGCCTCATA CTCAATGCGT GTGGGGGTCT GATTCCAGCT CTTCTGAGTC P*01010102 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- P*02010101 ---------- ---------- ---------- ---------- ---------- ---------- -------T-- ---------- ---------- ---------- P*02010102 ---------- ---------- ---------- ---------- ---------- ---------- -------T-- ---------- ---------- ---------- gDNA 1096 | P*01010101 CCTCGGCCTC CACTCAGGTC AGGACCAGAA ATCTCTGTTT CCGCCTCAGA CACTAGAACT TTCCAAGGAA TAAGAGATTA TCCCAGGTGC CTGTGTCCAG P*01010102 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- P*02010101 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- P*02010102 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- gDNA 1196 | P*01010101 AATGCTGTCT GGGTTCTGTG CTCCCTTCCC CACCCCAGGT GTCCCGTCCA TTCTCAGGAT GGTCACATGG GTGCTGTGTC TCATGAGGAA TGCAAAGTGC P*01010102 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- P*02010101 ----T----- ---------- ---------- --------A- -----A---- ---------- ---------- ---------- ---------- ---------- P*02010102 ----T----- ---------- ---------- --------A- -----A---- ---------- ---------- ---------- ---------- ---------- gDNA 1296 | P*01010101 CTGAATTTTC TACCTCTTGC CCTCAG | ATCC CCTGAAGGCA CAGGTAACCC ACCACCCCAT CTCCAACTAT GAGGCCACGC TGAGGTGCTG GGCCCTGGGC P*01010102 ---------- ---------- ------ | ---- ---------- ---------- ---------- ---------- ---------- ---------- ---------- P*02010101 ---------- ---------- ------ | ---- ---------- ---------- T--------- ---------- ---------- ---------- ---------- P*02010102 ---------- ---------- ------ | ---- ---------- ---------- T--------- ---------- ---------- ---------- ---------- gDNA 1396 | P*01010101 TTCTACCCTC TGGAGATCAC ACTGACCCAG GAGCGGGATG GGGAGGACCA AATTCAGGAT GCAGAGTTTG TGGAGACCAG ACTTGCAGGG TACAGAACCT P*01010102 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- P*02010101 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- P*02010102 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- gDNA 1496 | P*01010101 TCCAGAAGTG GGCAGCTGCA GTGGTGTCTT CTGGAGAGAA GCAGAGGTAC ACATGCCATG TGCAGCATGA GGGGTTGCCT GAGCCCCTCA CACTAAGATG P*01010102 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- P*02010101 ---------- ---------- ---------- ---------- ---------- ---------- -------C-- ---------- ---------- ---------- P*02010102 ---------- ---------- ---------- ---------- ---------- ---------- -------C-- ---------- ---------- ---------- gDNA 1596 | P*01010101 GG | GTAAGGAG ACGAATGAGA GGTCATGTCT CTTCTCAGGC AAAGCAGAAG TCCTTCTGGA GCCTTTAAGC AGGGTCAGGG CTGAGGCCTG GGGGTCAGGG P*01010102 -- | -------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- P*02010101 -- | -------- ---------G ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- P*02010102 -- | -------- ---------G ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- gDNA 1696 | P*01010101 CCCCTCACGT TCACCTCCTT TCTTAG | AGCT GTCTTCCCAG CCCATCATCC CCGTTGTGGG CATCATTGCT GGCCTGGTTC TTCTCGTTGC TGTATTCACT P*01010102 ---------- ---------- ------ | ---- ---------- ---------- ---------- ---------- ---------- ---------- ---------- P*02010101 ---------- ---------- ------ | ---- ---------- ---------- ---------- ---------- ---------- ----A----- ----A----- P*02010102 ---------- ---------- ------ | ---- ---------- ---------- ---------- ---------- ---------- ----A----- ----A----- gDNA 1796 | P*01010101 GTAGCTGTGG TCGCTGCTGT GATGTGGAGG AATAAGATCC CAG | GTAGGAA AGGGGTGAGC TCTGAGTTTC CTTCTTCCAT TGGTGGATTT CAAGCCCCAG P*01010102 ---------- ---------- ---------- ---------- --- | ------- ---------- ---------- ---------- ---------- ---------- P*02010101 ---------- ---------- ---------- ---------- --- | ------- ---------- ---------- ---------- ---------- ---------- P*02010102 --------A- ---------- ---------- ---------- --- | ------- ---------- ---------- ---------- ---------- ---------- gDNA 1896 | P*01010101 GTAGGAGTTG GCTCATATCT TGCCTAGTTG TGAGGCACCA TCTCCACACA CATTTACCCT GTTCAGAGGC CCTGTCTATC AACACTTACT CTTTTGTAAA P*01010102 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- --------A- ---------- P*02010101 --------A- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---G------ ---------- P*02010102 --------A- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---G------ ---------- gDNA 1996 | P*01010101 GCACCTGTGA AAATGAAGGA CAAATTTATC ACCTTGATTG TGGTCATGGG AACCTGACTC CCAGCAGTCA CAGGTCAGGG GAAGGTCCCT GCTGAGGACA P*01010102 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- P*02010101 ----T----- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- P*02010102 ----T----- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- gDNA 2096 | P*01010101 GACCTCAGGA GGACAACTGG TCCAGCCTCA ACACATCCTC TTCCCTTGGG TTTTCTGATC CTGACCTGGG TCTGTAGTCA CAGTTCTGGA AACTTCTCTA P*01010102 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- P*02010101 ---------- ------T--- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ----C----- P*02010102 ---------- ------T--- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ----C----- gDNA 2196 | P*01010101 GGATCTCATG CCCTGCCTCC TCCCTGGCCT CTCACAGTTT GTTTTCTTTC CACAG | ATGGA AAAGGAGGCA GTTATGCTCA GGCTTCAT | GT AAGTGTGGTA P*01010102 ---------- ---------- ---------- ---------- ---------- ----- | ----- ---------- ---------- -------- | -- ---------- P*02010101 ---------- ---------- ---------- ---------- ---------- ----- | ----- ---------- ---------- -------- | -- ---------- P*02010102 ---------- ---------- ---------- ---------- ---------- ----- | ----- ---------- ---------- -------- | -- ---------- gDNA 2296 | P*01010101 GGGGTGGGAA GAGTGATCCC TGAGATCCTT GGGATAGTGT AGACAGGAGC CCATGGGGGA GCTCAGCCAC CCCAAAATTC CTCCTTTAGT CACATCACCT P*01010102 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- P*02010101 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- P*02010102 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- gDNA 2396 | P*01010101 GTGGGCTCTG ACCAGATTTT GTTTTTGTTC CACCCCAA | AC AGGAACAGTA CCCAGGGCTC TGATGTGTCT CTCACGGCTT GTAAAA | GTGA CACCTTAGAG P*01010102 ---------- ---------- ---------- -------- | -- ---------- ---------- ---------- ---------- ------ | ---- ---------- P*02010101 ---------- ---------- ---------- -------- | -- ---------- ---------- ---------- ----A----- ------ | ---- ---------- P*02010102 ---------- ---------- ---------- -------- | -- ---------- ---------- ---------- ----A----- ------ | ---- ---------- gDNA 2496 | P*01010101 GGCCTGAAGT GAAAGAGGAG TTGGGCAGAG GGGACACAAC TAAGCTCTGG AGATTCTTTG ATTTGGAATT TTTCAAGGTG TGGTGGGCTG TTCAGTGTCA P*01010102 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- P*02010101 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- P*02010102 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- gDNA 2596 | P*01010101 CAACTTACTG TGACTGACCT GGATTAGTTT ATGACTATGT TTTTTCTAA | G ATTGCCTTGT GAGGGACTGA GATGCAAGAT TTGTTCATGC CTCCTCTTTG P*01010102 ---------- ---------- ---------- ---------- --------- | - ---------- ---------- ---------- ---------- ---------- P*02010101 ---------- ---------- ---------- ---------- --------- | - ---------- ---------- ---------- ---------- ---------- P*02010102 ---------A ---------- ---------- ---------- --------- | - ---------- ---------- ---------- ---------- ---------- gDNA 2696 | P*01010101 TGACATTAAG GGCCTCTGGC TTCTCTTTCT GCCAAAGCAT CTGAATGTGT CTATGTCTAC AGTAACAGGT AAGAAATGGG AGACCAGCCC ATCCTCATGT P*01010102 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- P*02010101 ---------- A--------- ---------- -------GG- ---------- ---------- ---------- ---------- ---------- ---------- P*02010102 ---------- A--------- ---------- -------GG- ---------- ---------- ---------- ---------- ---------- ---------- gDNA 2796 | P*01010101 CCACCATGAC CCCTGATATT GTTTGGATCT GTGTCCCCAC ACAAATCTCA TGTTCAATTG TAATCCCTAA TTTTGGAGGT GGTGTCTGGT GGCAGGTGAT P*01010102 ---------- ---------- ---------- ---------- C--------- ---------- ---------- ---------- ---------- ---------- P*02010101 ---------- ---------- ---------- ---------- C--------- ---------- ---------- ---------- ---------- ---------- P*02010102 ---------- ---------- ---------- ---------- C--------- ---------- ---------- ---------- ---------- ---------- gDNA 2896 | P*01010101 CGGCTCATGA GGATGGATCC TTCATGAACG GTTTAGAACC ATCTCT P*01010102 ---------- ---------- ---------- ---------- ------ P*02010101 ---------- ---------- ---------- ---------- ------ P*02010102 ---------- ---------- ---------- ---------- ------