HLADB-2.28.0-January 2010 HLA-K Nucleotide Sequence Alignments Sequences Aligned: 15 January 2010 Steven G. E. Marsh, Anthony Nolan Research Institute. Nuc. Pos. 30 60 Prot. Pos. -20 -10 -1 1 K*01010101 ATG GGG TCA TGG CGT CCC GAA CCC TCC TCC TGC TGC TCT TGG GGG CCC TGG CCC TGA CCG AGA CCT GGG CGG | GTA K*01010102 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- | --- K*01010103 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- | --T K*01010104 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- | --T K*0102 --- --- -T- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- | --T K*0103 --- --- --- --- --- --- A-- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- | --- Nuc. Pos. 90 120 150 Prot. Pos. 10 20 K*01010101 CCC ACT CCA TAA GGT ATT TCA GCA CCG CCG TGT CCC GGC CGG GTC GCG GGG AGC CCC GGT ACA TCG CAG TGG GCT K*01010102 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- K*01010103 --- --- --- --- --- -G- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- K*01010104 --- --- --- --- --- -G- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- K*0102 --- --- --- --- --- -G- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- K*0103 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- Nuc. Pos. 180 210 Prot. Pos. 30 40 50 K*01010101 ACG TGG ACG ACA CGC AGT TCG TGC GGT TCG ACA GCG ACG CGG CGA CTC CGA GGA TGT AGC CGC AGT CGC CGT GGT K*01010102 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --G --- A-- --- K*01010103 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- C-- --- --- --- --- --- --- K*01010104 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --G --- --- --- K*0102 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --G --- --- --- K*0103 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --G --- --- --- Nuc. Pos. 240 270 300 Prot. Pos. 60 70 K*01010101 TGG AGC AGG AGG GAC CGG AGT ATT GGG ACC GGA GCA CAC GGA ACA TCA GGC CCG CGC ACA GAC TGA CAA GAG TGA K*01010102 --- --- --- -T- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- K*01010103 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- K*01010104 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- K*0102 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- K*0103 --- --- --- --- --- --- --- --- --- --- --- --- --- C-- --- --- --- --- --- --- --- --- --- --- --- Nuc. Pos. 330 360 Prot. Pos. 80 90 100 K*01010101 ACC TGC CCA TGC CGC GCC GCT ACT ACC ACC AGA GCT AGG CCG | GGT CTA ACA CCC TCC AGA TAA TGT ATG GCT GCG K*01010102 --- --- --- --- --- --- --- --- --- --- --- --- --- --- | --- --- --- --- --- --- --- --- --- --- --- K*01010103 --- --- --- --- --- --- --- --- --- --- --- --- --- --- | --- --- --- --- --- --- --- --- --- --- --- K*01010104 --- --- --- --- --- --- --- --- --- --- --- --- --- --- | --- --- --- A-- --- --- --- --- --- --- --- K*0102 --- --- --- --- --- --- --- --- --- --- --- --- --- --- | --- --- --- --- --- --- --- --- --- --- --- K*0103 --- --- --- --- --- --- --- --- --- --- --- --- --- --- | --- --- --- --- --- --- --- --- --- --- --- Nuc. Pos. 390 420 450 Prot. Pos. 110 120 K*01010101 ACT TGG GGC TGG AAG GGC GCC TCC TCC GCG GGT ATG AAC AGC ACG CCA ACG ATG GCA AGG ATT ACA TAG CCC GGA K*01010102 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --C --- --- --- --- --- --- --- --- --- --- K*01010103 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- K*01010104 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- K*0102 --- C-- --- --- --C --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- K*0103 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- Nuc. Pos. 480 510 Prot. Pos. 130 140 150 K*01010101 ACT AGG ACC TGC GCT CCT GGA CCG CGG CGG ACA TGG CGG CTC AGA TCA CCA AGC GCA AGT GGG AGG CAG AAG AAT K*01010102 --- --- --- --- --- --- --- --- --- --- --- --- A-- --- --- --- --- --- --- --- --- --- --- --- --- K*01010103 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- T-- --- --- --- --- --- --- --- --- K*01010104 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- K*0102 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- K*0103 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- Nuc. Pos. 540 570 600 Prot. Pos. 160 170 K*01010101 TTG CAG AGC AGA TCA GGG CCT ACC TGG AGG GCA CGT GCG TGG AGA GGC TCG CAG ACA CCT GGA GAA CGG GAA GGA K*01010102 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- K*01010103 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- K*01010104 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- K*0102 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- K*0103 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- Nuc. Pos. I I I 630 660 Prot. Pos. 180 I I I 190 K*01010101 GAC GCT GCA GCT CAC GG | A C . CT CTC CCC . CA . G ACA CAT ATG ATC CAC CAT TCC GTC TCT GAC K*01010102 --T --- --- --- --- -- | - - . -C -C- -A- . -- A - --- --- --- --- --- --- --- A-- --- --- K*01010103 --- --- --- --- --- T- | - - . -C -CG --- C -- . - --- --- --- --- --- --- --- --- --- --- K*01010104 --T --- --- --- --- -- | - - A -C -C- -T- . -- A - --- --- --- --- --- --- --- A-- --- --- K*0102 --T --- --- --- --- -- | - - A -C -C- --- G -- A - --- --- --- --- --- --- --- A-- --- --- K*0103 --- --- --- --- --- -- | - - . -C -C- --- C -- A - --- --- --- --- --- --- --- --- --- --- Nuc. Pos. 690 720 Prot. Pos. 200 210 220 K*01010101 TAT AAG GCC ACC CTG AGG TGC TGG GCC CTG GGC TTC TAC CCT GTG GAG ATC ACA CTG GCC TGG CAG CAG GAT GGA K*01010102 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- A-- --- --- --- --- --- K*01010103 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- A-- --- --- --- --- --- K*01010104 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- AG- --- --- --A --- --- K*0102 --- --- --- --- --- --- --- --- --- --- --- --- --- --- A-- --- --- --- --- AG- --- --- --- --- -A- K*0103 --- --- --- --- --- --A --- --- --- --- --- --- --- --- --- --- --- --- --- A-- --- --- --- --- --- Nuc. Pos. 750 780 810 Prot. Pos. 230 240 K*01010101 GAG GAC CAG ACT CGG GAC ATG GAG CTT CTA GAG ACC AGG CCT GCA GGG GAT GGA ACC TTC CAG AAG TGG GCA GCT K*01010102 --- --- --- --- --- --- --- --- --- G-- --- --- --- --- --- --- --- --- -A- --- --- --- --- --- --- K*01010103 --- --- --- --- A-- --- --- --- --- G-- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- K*01010104 --- --- --- --- --- --- --- --- --- G-- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- K*0102 --- --- --- --- --- --- --- --- --- G-- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- K*0103 --- --- --- --- -A- --- --- --- --- G-- --- --- --- --- --- --- --- --- -A- --- --- --- --- --- --- Nuc. Pos. 840 870 Prot. Pos. 250 260 270 K*01010101 GTG GTG GTG CCT TCT GGA GAG GAA CAG AGA TAC CCG TGC CAT GTG CAG CAT GAG GGG TTG CCC AAG CCC CTC ACC K*01010102 --- --- --- --- --- --- --- --- --- --- --- AT- --- --- --- --- --- --- --- --- --- --- --- --- --- K*01010103 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- K*01010104 --- --- --- --- --- --- --- --- --- --- --- AT- --- --- --- --- --- --- --- --- --- G-- --- --- --- K*0102 --- --- --- --- --- --- --- --- --- -.. --- AT- --- --- --- --- --- --- --- --- --- G-- --- --- --- K*0103 --- --- --- --- --- --- --- --- --- --- --- AT- --- --- --- --- --- --- --- --- --- --- --- --- --- Nuc. Pos. 900 930 960 Prot. Pos. 280 290 K*01010101 CTG AGA TGG G | AG CAG TCT TCT CAG CCC ACC ATC CCC ATC GTG GGT ATC GTT GCT GGC CTG GTT CTC CTT GGA GCT K*01010102 --- --- --- A | -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- K*01010103 --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- --C --- A-- --- --- --- --- --- --- --- --- K*01010104 --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- --C --- --- A-- --- --- --- --- --- --- --- K*0102 --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- --C --- --- A-- --- --- --- --- --- --- --- K*0103 --- --- --- A | -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- Nuc. Pos. 990 1020 Prot. Pos. 300 310 320 K*01010101 GTA GTC ACT GGA GCT GTG GTT TCT GCT GTG ATG TGC AGG AAG AAG AAC TCA G | AT AGA GTG AGC TAC TCT GAA GCT K*01010102 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- --- --- --- K*01010103 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- --- --- --- K*01010104 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- --- --- --- K*0102 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- --- --- --- K*0103 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --. ..- --- - | -- --- --- --- --- --- --- --- Nuc. Pos. 1050 1080 Prot. Pos. 330 K*01010101 GCA A | GC AGC GAC CAT GCG CAG GGT TCT GAT GTG TCT CTC ACG GCT TGT AAA G | TG TGA K*01010102 --- - | -- --T --- --- --- --- --- --- --- --- --- --- -T- --- --- --- - | -- --- K*01010103 --- - | -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- - | -- --- K*01010104 --- - | -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- - | -- --- K*0102 --- - | -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- - | -- --- K*0103 --- - | -- --- A-- --- --- --- --- --- --- --- --- --- --- --- --- --- - | -- ---