HLA-J Nucleotide Sequence Alignments IMGT/HLA Release: 3.7.0 Sequences Aligned: 12 January 2012 Steven GE Marsh, Anthony Nolan Research Institute. Please see http://hla.alleles.org/terms.html for terms of use. cDNA 1 | J*01:01:01:01 ATG GGG TCA TGG CGC CCC GAA CCC TCC TCC TGC TGC TCT CGG GGA CCC TGG CCC TGG CCG AGA CCT GGG CGG |GCT J*01:01:01:02 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- |--- J*01:01:01:03 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- |--- J*01:01:01:04 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- |--- J*01:01:01:05 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- |--- J*01:01:01:06 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- |--- J*01:01:01:07 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- |--- J*01:01:01:08 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- |--- J*02:01 --- --- --- --- --- --- --- --- --- --- --- --- --- --- -.- --- --. --- --- --- --- --- --- --- |--- cDNA 76 | J*01:01:01:01 CCC ACT CCA TGA GGT ATT TCA GCA CCG CCG TTT CCT GGC CGG GCC GCG GGG AGC CCA GCT TCA TTG CCG TGG GCT J*01:01:01:02 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*01:01:01:03 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*01:01:01:04 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*01:01:01:05 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*01:01:01:06 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*01:01:01:07 --- --- --- --- --- --- --- --- --- -G- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*01:01:01:08 --- --- --- --- --- --- --- --- --- -G- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*02:01 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- cDNA 151 | J*01:01:01:01 ACG TGG ACG ACA CGC AGT TCG TGC GGG TCG ACA GTG ACG CCG TGA GTC TGA GGA TGA AGA CGC GGG CGC GGT GGG J*01:01:01:02 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*01:01:01:03 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*01:01:01:04 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*01:01:01:05 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*01:01:01:06 --- --- --- --- --- --- --A --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*01:01:01:07 --- --- --- --- --- --G --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*01:01:01:08 --- --- --- --- --- --G --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*02:01 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- cDNA 226 | J*01:01:01:01 TGG AGC .AGG AGG GGC CGG AGT ATT GGG ACC TAC AGA CAC TGG GCG CCA AGG CCC AGG CAC AGA CTG ACC GAG TGA J*01:01:01:02 --- --- .--- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*01:01:01:03 --- --- .--- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*01:01:01:04 --- --- .--- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*01:01:01:05 --- --- .--- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*01:01:01:06 --- --- .--- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*01:01:01:07 --- --- C--- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*01:01:01:08 --- --- .--- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*02:01 --- --- .--- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- cDNA 301 | J*01:01:01:01 ACC TGC GGA CCC TGC TCC GCT ACT ACA ACC AGA GCG AGG CGG |GGT ATC ACA TCC TCC AGG GAA TGT TTG GCT GCG J*01:01:01:02 --- --- --- --- --- --- --- --- --- --- --- --- --- --- |--- --- --- --- --- --- --- --- --- --- --- J*01:01:01:03 --- --- --- --- --- --- --- --- --- --- --- --- --- --- |--- --- --- --- --- --- --- --- --- --- --- J*01:01:01:04 --- --- --- --- --- --- --- --- --- --- --- --- --- --- |--- --- --- --- --- --- --- --- --- --- --- J*01:01:01:05 --- --- --- --- --- --- --- --- --- --- --- --- --- --- |--- --- --- --- --- --- --- --- --- --- --- J*01:01:01:06 --- --- --- --- --- --- --- --- --- --- --- --- --- --- |--- --- --- --- --- --- --- --- --- --- --- J*01:01:01:07 --- --- --- --- --- --- --- --- --- --- --- --- --- --- |C-- --- --- --- --- --- --- --- --- --- --- J*01:01:01:08 --- --- --- --- --- --- --- --- --- --- --- --- --- --- |C-- --- --- --- --- --- --- --- --- --- --- J*02:01 --- --- --- --- --- --- --- --- --- --- --- --- --- --- |--- --- --- --- --- --- --- --- --- --- --- cDNA 376 | J*01:01:01:01 ACC TGG GGC CCG ACG GGC GTC TCC TCC GCG GGT ATG AGC AGT ATG CCT ACG ACG GCA AGG ATT ACA TCG CCC TGA J*01:01:01:02 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*01:01:01:03 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*01:01:01:04 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*01:01:01:05 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*01:01:01:06 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*01:01:01:07 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*01:01:01:08 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*02:01 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- cDNA 451 | J*01:01:01:01 ACG AGG ACC TGC GCT CCT GGA CCG CCG CGG ATA CCG CGG CTC AGA TTA CCC AGC GCA AGT ATG AGG CGG CCA ATG J*01:01:01:02 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*01:01:01:03 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*01:01:01:04 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*01:01:01:05 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*01:01:01:06 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*01:01:01:07 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*01:01:01:08 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*02:01 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- cDNA 526 | J*01:01:01:01 TGG CTG AGC AAA GGA GAG CCT ACC TGG AGG GCA CCT GCA TGG AGT GGC TCC GCA GAC ACC TGG AGA ACG GGA AGG J*01:01:01:02 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*01:01:01:03 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*01:01:01:04 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*01:01:01:05 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*01:01:01:06 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*01:01:01:07 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*01:01:01:08 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*02:01 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- cDNA 601 | J*01:01:01:01 AGA CGC TGC AGC GCG CGG |ACC CCC CCC AAG ACA CAC GTG ACC CAC CCC CC..T CTC TGA ACA TGA GGC ATA ACG AGG J*01:01:01:02 --- --- --- --- --- --- |--- --- --- --- --- --- --- --- --- --- --..- --- --- --- --- --- --- --- --- J*01:01:01:03 --- --- --- --- --- --- |--- --- --- --- --- --- --- --- --- --- --..- --- --- --- --- --- --- --- --- J*01:01:01:04 --- --- --- --- --- --- |--- --- --- --- --- --- --- --- --- --- --..- --- --- --- --- --- --- --- --- J*01:01:01:05 --- --- --- --- --- --- |--- --- --- --- --- --- --- --- --- --- --..- --- --- --- --- --- --- --- --- J*01:01:01:06 --- --- --- --- --- --- |--- --- --- --- --- --- --- --- --- --- --..- --- --- --- --- --- --- --- --- J*01:01:01:07 --- --- --- --- --- --- |--- --- --A .-- --- --- --- --- --- -A- --TG- --- --- --- --- --- --- --- --- J*01:01:01:08 --- --- --- --- --- --- |--- --- --A .-- --- --- --- --- --- -A- --TG- --- --- --- --- --- --- --- --- J*02:01 --- --- --- --- --- --- |--- --- --- --- --- --- --- --- --- --- --..- --- --- --- --- --- --- --- --- cDNA 676 | J*01:01:01:01 TCC TGG GTT CTG GGC TTC TAC CCT GCG GAG ATC ACA TTG ACC TGG CAG CGG GAT GGG GAG GAC CAG ACC CAG GAC J*01:01:01:02 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*01:01:01:03 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*01:01:01:04 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*01:01:01:05 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*01:01:01:06 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*01:01:01:07 -G- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*01:01:01:08 -G- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*02:01 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- cDNA 751 | J*01:01:01:01 ATG GAG CTC GTG GAG ACC AGG CCC ACA GGG GAT GGA ACC TTC CAG AAG TGG GCG GTT GTG GTA GTG CCT TCT GGA J*01:01:01:02 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*01:01:01:03 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*01:01:01:04 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*01:01:01:05 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*01:01:01:06 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*01:01:01:07 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*01:01:01:08 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*02:01 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- cDNA 826 | J*01:01:01:01 GAG GAA CAG AGA TAC ACA TGC CAT GTG CAG CAC AAG GGG .CTG CCC AAG CCC CTC ATC CTG AGA TGG G|AG CCC TCT J*01:01:01:02 --- --- --- --- --- --- --- --- --- --- --- --- --- .--- --- --- --- --- --- --- --- --- -|-- --- --- J*01:01:01:03 --- --- --- --- --- --- --- --- --- --- --- --- --- .--- --- --- --- --- --- --- --- --- -|-- --- --- J*01:01:01:04 --- --- --- --- --- --- --- --- --- --- --- --- --- .--- --- --- --- --- --- --- --- --- -|-- --- --- J*01:01:01:05 --- --- --- --- --- --- --- --- --- --- --- --- --- .--- --- --- --- --- --- --- --- --- -|-- --- --- J*01:01:01:06 --- --- --- --- --- --- --- --- --- --- --- --- --- .--- --- --- --- --- --- --- --- --- -|-- --- --- J*01:01:01:07 --- --- --- --- --- --- --- --- --- --- --- --- --- .--- --- --- --- --- --- --- --- --- -|-- --- --- J*01:01:01:08 --- --- --- --- --- --- --- --- --- --- --- --- --- .--- --- --- --- --- --- --- --- --- -|-- --- --- J*02:01 --- --- --- --- --- --- --- --- --- --- --- --- --- C--- --- --- --- --- --- --- --- --- -|-- --- --- cDNA 901 | J*01:01:01:01 CCC CAG CCC ACC ATC CCC ATT GTG GGT ATC ATT GCT GGC CTG GTT CTC CTT GGA GCT GTG GTC ACT GGA GCT GTG J*01:01:01:02 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*01:01:01:03 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*01:01:01:04 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*01:01:01:05 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*01:01:01:06 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- J*01:01:01:07 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... J*01:01:01:08 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... J*02:01 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- cDNA 976 | J*01:01:01:01 GTC ACT GCT GTG ATG TGG AGG AAG AAG AGC TCA G|AT AGA AAA GGA GGG AGC TAC TCT CAG GCT GCA A|GC AGC CAA J*01:01:01:02 --- --- --- --- --- --- --- --- --- --- --- -|-- --- --- --- --- --- --- --- --- --- --- -|-- --- --- J*01:01:01:03 --- --- --- --- --- --- --- --- --- --- --- -|-- --- --- --- --- --- --- --- --- --- --- -|-- --- --- J*01:01:01:04 --- --- --- --- --- --- --- --- --- --- --- -|-- --- --- --- --- --- --- --- --- --- --- -|-- --- --- J*01:01:01:05 --- --- --- --- --- --- --- --- --- --- --- -|-- --- --- --- --- --- --- --- --- --- --- -|-- --- --- J*01:01:01:06 --- --- --- --- --- --- --- --- --- --- --- -|-- --- --- --- --- --- --- --- --- --- --- -|-- --- --- J*01:01:01:07 --- --- --- --- --- --- --- --- --- --- --- -|-- --- --- --- --- --- --- --- --- --- --- -|-- --- --- J*01:01:01:08 --- --- --- --- --- --- --- --- --- --- --- -|-- --- --- --- --- --- --- --- --- --- --- -|-- --- --- J*02:01 --- --- --- --- --- --- --- --- --- --- --- -|-- --- --- --- --- --- --- --- --- --- --- -|-- --- --- cDNA 1051 | J*01:01:01:01 AGT GCC CAG GGC TCT GAT GTG TCT CTC ACG GCT TGT AAA G|TG TGA J*01:01:01:02 --- --- --- --- --- --- --- --- --- --- --- --- --- -|-- --- J*01:01:01:03 --- --- --- --- --- --- --- --- --- --- --- --- --- -|-- --- J*01:01:01:04 --- --- --- --- --- --- --- --- --- --- --- --- --- -|-- --- J*01:01:01:05 --- --- --- --- --- --- --- --- --- --- --- --- --- -|-- --- J*01:01:01:06 --- --- --- --- --- --- --- --- --- --- --- --- --- -|-- --- J*01:01:01:07 --- --- --- --- --- --- --- --- --- --- --- --- --- -|-- --- J*01:01:01:08 --- --- --- --- --- --- --- --- --- --- --- --- --- -|-- --- J*02:01 --- --- --- --- --- --- --- --- --- --- --- --- --- -|-- --- Please see http://hla.alleles.org/terms.html for terms of use.