HLADB-2.28.0-January 2010 HLA-J Genomic Nucleotide Sequence Alignments Sequences Aligned: 15 January 2010 Steven GE Marsh, Anthony Nolan Research Institute. 5' UTR gDNA -301 | J*01010101 CAGGAGGAGC GGGGTCAGGG CGAAGTCCCA GAGCCCCAGG CATGGCTCTC AGGGTCTCAG GCCCCGAAGG CGGTGCATGG GCTGGGGAGG TGCAGCATTG J*01010102 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010103 ---------- ---------- ---------- ---------- ---------- ---------- ---------. ---------- ---------- ---------- J*01010104 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010105 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010106 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010107 ---------- ---------- ---------- ---------- ---------- ------C--- ---------- ---------- A--------- ---------- J*01010108 ---------- ---------- ---------- ---------- ---------- ------C--- ---------- ---------- A--------- ---------- J*0201 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- gDNA -201 | J*01010101 GGGATTCCCC ATCTCCGCAG AGTTTCTCTT CTCCCTCTCC CAGCCTGCGA CGGGTCCTTC TTCCTGGACA CTCACGACGC GGACCCAGTT CTCACTCCCA J*01010102 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010103 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010104 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010105 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010106 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010107 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010108 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*0201 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- gDNA -101 | J*01010101 CTGAGTGTCG GGTTTCTAGG GAAGCCAATC AGCGTCGCGC GGCCCCGGTT CTAAAGTCCC CACGCACCCA CCGGGACTCG GAGTCTCCCC AGACGCCGAC J*01010102 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010103 ---------- ---------. ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010104 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010105 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010106 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010107 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010108 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*0201 ---------- ---------- ---------- ---------- ---------- ---------- --------.- ---------- ---------- ---------- | Exon 1 Exon 1 | Intron 1 gDNA -1 | 1 | | | J*01010101 G | ATGGGGTCA TGGCGCCCCG AACCCTCCTC CTGCTGCTCT CGGGGACCCT GGCCCTGGCC GAGACCTGGG CGG | GTGAGTG CGGGGTCAGG AGGGAAACGG J*01010102 - | --------- ---------- ---------- ---------- ---------- ---------- ---------- --- | ------- ---------- ---------- J*01010103 - | --------- ---------- ---------- ---------- ---------- ---------- ---------- --- | ------- ---------- ---------- J*01010104 - | --------- ---------- ---------- ---------- ---------- ---------- ---------- --- | ------- ---------- ---------- J*01010105 - | --------- ---------- ---------- ---------- ---------- ---------- ---------- --- | ------- ---------- ---------- J*01010106 - | --------- ---------- ---------- ---------- ---------- ---------- ---------- --- | ------- ---------- ---------- J*01010107 - | --------- ---------- ---------- ---------- ---------- ---------- ---------- --- | ------- ---------- ---------- J*01010108 - | --------- ---------- ---------- ---------- ---------- ---------- ---------- --- | ------- ---------- ---------- J*0201 - | --------- ---------- ---------- ---------- ----.----- -.-------- ---------- --- | ------- ---------- ---------- gDNA 100 | J*01010101 CCTCTGCCGT GAGGAGCGAA AGGTCCACCT GGCTGGGGCG CAGGACCCGG GGAGCCGCGC CGGGAGGAGG GTCGGGCGGG TCTCAGCCCC TCCTCGCCCC J*01010102 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010103 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010104 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010105 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010106 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010107 ---------- ---------- ------G--- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010108 ---------- ---------- ------G--- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*0201 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- Intron 1 | Exon 2 gDNA 200 | | | J*01010101 CAG | GCTCCCA CTCCATGAGG TATTTCAGCA CCGCCGTTTC CTGGCCGGGC CGCGGGGAGC CCAGCTTCAT TGCCGTGGGC TACGTGGACG ACACGCAGTT J*01010102 --- | ------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010103 --- | ------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010104 --- | ------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010105 --- | ------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010106 --- | ------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010107 --- | ------- ---------- ---------- ----G----- ---------- ---------- ---------- ---------- ---------- --------G- J*01010108 --- | ------- ---------- ---------- ----G----- ---------- ---------- ---------- ---------- ---------- --------G- J*0201 --- | ------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- gDNA 300 | J*01010101 CGTGCGGGTC GACAGTGACG CCGTGAGTCT GAGGATGAAG ACGCGGGCGC GGTGGGTGGA GC.AGGAGGG GCCGGAGTAT TGGGACCTAC AGACACTGGG J*01010102 ---------- ---------- ---------- ---------- ---------- ---------- --.------- ---------- ---------- ---------- J*01010103 ---------- ---------- ---------- ---------- ---------- ---------- --.------- ---------- ---------- ---------- J*01010104 ---------- ---------- ---------- ---------- ---------- ---------- --.------- ---------- ---------- ---------- J*01010105 ---------- ---------- ---------- ---------- ---------- ---------- --.------- ---------- ---------- ---------- J*01010106 -A-------- ---------- ---------- ---------- ---------- ---------- --.------- ---------- ---------- ---------- J*01010107 ---------- ---------- ---------- ---------- ---------- ---------- --C------- ---------- ---------- ---------- J*01010108 ---------- ---------- ---------- ---------- ---------- ---------- --.------- ---------- ---------- ---------- J*0201 ---------- ---------- ---------- ---------- ---------- ---------- --.------- ---------- ---------- ---------- Exon 2 | Intron 2 gDNA 399 | | | J*01010101 CGCCAAGGCC CAGGCACAGA CTGACCGAGT GAACCTGCGG ACCCTGCTCC GCTACTACAA CCAGAGCGAG GCGG | GTGAGT GACCCCGGCC CGGGGCGCAG J*01010102 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---- | ------ ---------- ---------- J*01010103 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---- | ------ ---------- ---------- J*01010104 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---- | ------ ---------- ---------- J*01010105 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---- | ------ ---------- ---------- J*01010106 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---- | ------ ---------- ---------- J*01010107 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---- | ------ ---------- ---------- J*01010108 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---- | ------ ---------- ---------- J*0201 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---- | ------ ---------- ---------- gDNA 499 | J*01010101 ATCACTTACT CCCCGCTCCA TGCCTCACGG ACGGCCCTGG TCCCCTGAGT CTCCGGGTCC AAGATCGACC CCGAGGCTGC GGGACCTGCA GAGATCCTCG J*01010102 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010103 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010104 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010105 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010106 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010107 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010108 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*0201 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- --.------- ---------- gDNA 599 | J*01010101 ACCCGGGAGA GCCCCAGGCG CCTTTACCTG GTTTCATCTT CAGTTGAGGC CAAAATCTCC GCAGGTTGCT AGGGGCCGGG CCAGGGCTCG GTGGGCGGGG J*01010102 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ----T----- ---------- ---------- J*01010103 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010104 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010105 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010106 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010107 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ------G--- --G------- ---------- J*01010108 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ------G--- --G------- ---------- J*0201 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ----T----- ---------- ---------- Intron 2 | Exon 3 gDNA 699 | | | J*01010101 CTGACCGCGG GAACTGGGCC AG | GGTATCAC ATCCTCCAGG GAATGTTTGG CTGCGACCTG GGGCCCGACG GGCGTCTCCT CCGCGGGTAT GAGCAGTATG J*01010102 ---------- ---------- -- | -------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010103 ---------- ---------- -- | -------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010104 ---------- ---------- -- | -------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010105 ---------- ---------- -- | -------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010106 ---------- ---------- -- | -------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010107 ---------- ---------- T- | C------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010108 ---------- ---------- T- | C------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*0201 ---------- ---------- -- | -------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- gDNA 799 | J*01010101 CCTACGACGG CAAGGATTAC ATCGCCCTGA ACGAGGACCT GCGCTCCTGG ACCGCCGCGG ATACCGCGGC TCAGATTACC CAGCGCAAGT ATGAGGCGGC J*01010102 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010103 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010104 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010105 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010106 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010107 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010108 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*0201 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- Exon 3 | Intron 3 gDNA 899 | | | J*01010101 CAATGTGGCT GAGCAAAGGA GAGCCTACCT GGAGGGCACC TGCATGGAGT GGCTCCGCAG ACACCTGGAG AACGGGAAGG AGACGCTGCA GCGCGCG | GGT J*01010102 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ------- | --- J*01010103 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ------- | --- J*01010104 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ------- | --- J*01010105 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ------- | --- J*01010106 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ------- | --- J*01010107 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ------- | --- J*01010108 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ------- | --- J*0201 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ------- | --- gDNA 999 | J*01010101 ACCAGGGGCC ATGGGGAGCC TGCTCGATCT CCTGTAGATC TCCCGGGCTG GCCTCGCACA AGGAGGGGAA GAAAATGGAA ACACCACCAG AATATCGCCC J*01010102 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010103 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010104 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- C--------- ---------- J*01010105 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- C--------- ---------- J*01010106 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010107 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010108 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*0201 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- gDNA 1099 | J*01010101 TCCCTCCTGT CCTGACGGAG AGGAATCCTC CTGGGTTTCC AGATCCTGTA TCAGAGATTG ACTCTGAGGG CCCACCCTGC TCTTCCTGGG ACAATTAAGG J*01010102 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010103 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010104 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010105 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010106 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010107 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010108 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*0201 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- gDNA 1199 | J*01010101 GATGAAGTCT CTGAGGGAGT GGAGGGGAAG ACAATCCCTG GAAGACTGAT CCGCGGTCCC CTTTCACCCC ACAGCAACCT TGGGCACCAG GACTTTTCCT J*01010102 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010103 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010104 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010105 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010106 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010107 ---------- ----A----- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010108 ---------- ----A----- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*0201 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- gDNA 1299 | J*01010101 CCCGGGCCTT GTTCTCTGCC TCACACTCAA TGTGTCGGAG TCTGACTCCA GCTCCTCTGA GTCCCTTGGC CTCCACTCAG ATCAGGACCA GAAGTCCCTG J*01010102 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010103 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010104 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010105 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010106 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010107 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010108 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*0201 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- gDNA 1399 | J*01010101 CTACCCTGCT CAGAGACTAG AACTTTCCAA GGAATAGGAG ATTATCCCAG GCGCCTGTGT CCAGGCTGGT GTCTGGGCTC TGTGCTCCCT TCCCCACCCC J*01010102 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010103 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010104 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010105 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010106 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010107 ---------- ---------- ---------- ---------- ---------- ---------- -G-------- ---------- ---------- ---------- J*01010108 ---------- ---------- ---------- ---------- ---------- ---------- -G-------- ---------- ---------- ---------- J*0201 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- Intron 3 | Exon 4 gDNA 1499 | | | J*01010101 AGGTGTCCTA TTCATCAGGA TGGTCACATG GGCGCTGCTG GGGTGTCCCA TGAGGAATGC AAAGTGCCTG AGTTTTCCGA CTCTTCCTTT CAG | ACCCCCC J*01010102 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- --- | ------- J*01010103 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- --- | ------- J*01010104 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- --- | ------- J*01010105 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- --- | ------- J*01010106 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- --- | ------- J*01010107 ---------- ---------- ---------- ---------- ---------- ---------- ---------- -------T-- ---------- --- | ------- J*01010108 ---------- ---------- ---------- ---------- ---------- ---------- ---------- -------T-- ---------- --- | ------- J*0201 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- --- | ------- gDNA 1599 | J*01010101 CCAAGACACA CGTGACCCAC CCCCC..TCT CTGAACATGA GGCATAACGA GGTCCTGGGT TCTGGGCTTC TACCCTGCGG AGATCACATT GACCTGGCAG J*01010102 ---------- ---------- -----..--- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010103 ---------- ---------- -----..--- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010104 ---------- ---------- -----..--- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010105 ---------- ---------- -----..--- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010106 ---------- ---------- -----..--- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010107 -.-------- ---------- -A---TG--- ---------- ---------- ---G------ ---------- ---------- ---------- ---------- J*01010108 -.-------- ---------- -A---TG--- ---------- ---------- ---G------ ---------- ---------- ---------- ---------- J*0201 ---------- ---------- -----..--- ---------- ---------- ---------- ---------- ---------- ---------- ---------- gDNA 1697 | J*01010101 CGGGATGGGG AGGACCAGAC CCAGGACATG GAGCTCGTGG AGACCAGGCC CACAGGGGAT GGAACCTTCC AGAAGTGGGC GGTTGTGGTA GTGCCTTCTG J*01010102 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010103 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010104 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010105 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010106 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010107 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010108 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*0201 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- Exon 4 | Intron 4 gDNA 1797 | | | J*01010101 GAGAGGAACA GAGATACACA TGCCATGTGC AGCACAAGGG GC.TGCCCAA GCCCCTCATC CTGAGATGGG | GTAAGGAGAG AGATGGGGGC GGCCATGTCT J*01010102 ---------- ---------- ---------- ---------- --.------- ---------- ---------- | ---------- ---------- ---------- J*01010103 ---------- ---------- ---------- ---------- --.------- ---------- ---------- | ---------- ---------- ---------- J*01010104 ---------- ---------- ---------- ---------- --.------- ---------- ---------- | ---------- ---------- ---------- J*01010105 ---------- ---------- ---------- ---------- --.------- ---------- ---------- | ---------- ---------- ---------- J*01010106 ---------- ---------- ---------- ---------- --.------- ---------- ---------- | ---------- ---------- ---------- J*01010107 ---------- ---------- ---------- ---------- --.------- ---------- ---------- | ---------- ---------- --T------- J*01010108 ---------- ---------- ---------- ---------- --.------- ---------- ---------- | ---------- ---------- --T------- J*0201 ---------- ---------- ---------- ---------- --C------- ---------- ---------- | ---------- ---------- ---------- Intron 4 | Exon 5 gDNA 1896 | | | J*01010101 CTTAGGGAAA GCAGGAGCCC CTCTGGAGAC CTTTAGCAGG GTCGGGGCTG GGTCCTGGAG GTCAGAACCC TCACATTCCC CTCCTTTCCC AG | AGCCCTCT J*01010102 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- -- | -------- J*01010103 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- -- | -------- J*01010104 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- -- | -------- J*01010105 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- -- | -------- J*01010106 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- -- | -------- J*01010107 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- -- | -------- J*01010108 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- -- | -------- J*0201 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- -- | -------- gDNA 1996 | J*01010101 CCCCAGCCCA CCATCCCCAT TGTGGGTATC ATTGCTGGCC TGGTTCTCCT TGGAGCTGTG GTCACTGGAG CTGTGGTCAC TGCTGTGATG TGGAGGAAGA J*01010102 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010103 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010104 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010105 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010106 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010107 ---------- ---------- ---------- ---------- ---------- ---------. .......... ....------ ---------- ---------- J*01010108 ---------- ---------- ---------- ---------- ---------- ---------. .......... ....------ ---------- ---------- J*0201 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- Exon 5 | Intron 5 gDNA 2096 | | | J*01010101 AGAGCTCAG | G TGGGGAAGGG GTGAGGAGTC GGGTTTGAGT TTTCTTGTCC CACTGGGGGT TTCAAGCTCC AGGTAGAAAT GTGTTCTGCC TGGTTACCGG J*01010102 --------- | - ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010103 --------- | - ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010104 --------- | - ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010105 --------- | - ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010106 --------- | - ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010107 --------- | - ---------- ---------G ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010108 --------- | - ---------- ---------G ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*0201 --------- | - ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- gDNA 2196 | J*01010101 GAAGCACCAT CCACATTCAT GGGCCTACCC AGCCTGGGCC CTGTGTGCCA GCACTTACTC TTTTGTAAGC ACCTGTGACA ATGAAGGACA GATTTCTCAC J*01010102 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010103 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010104 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010105 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010106 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010107 ---------- ---------- ---------- -------A-- ---------- ---------- ---------- ---------- ---------- ---------- J*01010108 ---------- ---------- ---------- -------A-- ---------- ---------- ---------- ---------- ---------- ---------- J*0201 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- gDNA 2296 | J*01010101 CTTGATGATT GTAGTGATGG GGATCTGACC CCAGTAATCA CAGGTCAGGG GAAGGTCCCT GCTGAGGACA GACCTTAGGA GGGCAGTTGG TCCAGGACCC J*01010102 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010103 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010104 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010105 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010106 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010107 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010108 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*0201 ---------- ---------- ---------- ---------- ---------- -------.-- ---------- ---------- ---------- --.------. gDNA 2396 | J*01010101 ACATCTGCTT TCCTTGTTTT TCCTGATCCT GCCCTTGGTT TGCAGTCACA CATTTCTGGA AACTTCTCGA GGTTCCAAGA CTAGGAGGTT CCTCTAGGAC J*01010102 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010103 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010104 ---------- ---------- ---------- ---------- ---------- ---------- --------A- ---------- ---------- ---------- J*01010105 ---------- ---------C ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010106 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010107 ---------- ---------- ---------- ---------- ---------- ---------- ---------- --G------- -------C-- ---------- J*01010108 ---------- ---------- ---------- ---------- ---------- ---------- ---------- --G------- -------C-- ---------- J*0201 ---------- --.------- ..-------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- Intron 5 | Exon 6 Exon 6 | Intron 6 gDNA 2496 | | | | | J*01010101 CTCATGGCCC TGCTACCTTC CTGGCCTCTC ACAGGACGTT TTCTTCCCGC AG | ATAGAAAA GGAGGGAGCT ACTCTCAGGC TGCAA | GTAAG TATGAAGGAG J*01010102 ---------- ---------- ---------- ---------- ---------- -- | -------- ---------- ---------- ----- | ----- ---------- J*01010103 ---------- ---------- ---------- ---------- ---------- -- | -------- ---------- ---------- ----- | ----- ---------- J*01010104 ---------- ---------- ---------- ---------- ---------- -- | -------- ---------- ---------- ----- | ----- ---------- J*01010105 ---------- ---------- ---------- ---------- ---------- -- | -------- ---------- ---------- ----- | ----- ---------- J*01010106 ---------- ---------- ---------- ---------- ---------- -- | -------- ---------- ---------- ----- | ----- ---------- J*01010107 ---------- ---------- ---------- ---------- ---------- -- | -------- ---------- ---------- ----- | ----- ---------- J*01010108 ---------- ---------- ---------- ---------- ---------- -- | -------- ---------- ---------- ----- | ----- ---------- J*0201 ---------- ---------- ---------- ---------- ---------- -- | -------- ---------- ---------- ----- | ----- ---------- gDNA 2596 | J*01010101 GCTGATCCC. TGAGATCCTT GGGATATTGT GGTTGGGAGC CCATGGGGGA GCTCACCCAC CCCACAATTC CTCCTCTAGC CACATCTCCT GTGGGATCTG J*01010102 ---------. ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010103 ---------. ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010104 ---------. ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010105 ---------. ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010106 ---------. ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010107 ----GAT--C ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------C J*01010108 ---------. ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------C J*0201 ---------. ---------- ---------- ---------- -.-------- ---------- ---------- ---------- ---------- ---------- Intron 6 | Exon 7 Exon 7 | Intron 7 gDNA 2695 | | | | | J*01010101 ACCAGGTTCT GTTTTTGTTC TACCCCAG | GC AGCCAAAGTG CCCAGGGCTC TGATGTGTCT CTCACGGCTT GTAAAG | GTGA GACCCTGGGG AGGCTGATGT J*01010102 ---------- ---------- -------- | -- ---------- ---------- ---------- ---------- ------ | C--- ---------- ---------- J*01010103 ---------- ---------- -------- | -- ---------- ---------- ---------- ---------- ------ | ---- ---------- ---------- J*01010104 ---------- ---------- -------- | -- ---------- ---------- ---------- ---------- ------ | ---- ---------- ---------- J*01010105 ---------- ---------- -------- | -- ---------- ---------- ---------- ---------- ------ | ---- ---------- ---------- J*01010106 ---------- ---------- -------- | -- ---------- ---------- ---------- ---------- ------ | ---- ---------- ---------- J*01010107 ---------- ---------- -------- | -- ---------- ---------- ---------- ---------- ------ | ---- ---------- ---------- J*01010108 ---------- ---------- -------- | -- ---------- ---------- ---------- ---------- ------ | ---- ---------- ---------- J*0201 ---------- ---------- -------- | -- ---------- ---------- ---------- ---------- ------ | C--- ---------- ---------- gDNA 2795 | J*01010101 GTGTGGGTTG TTGGGGTAAC AGTGGATATA GCTGTGCTAT GGGGTTTCTT TGACTTGGAT GTATTCAGCA CATGATGGGC TGTTGAAGGT GTGACCCCTC J*01010102 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010103 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ----C----- ---------- J*01010104 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010105 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010106 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010107 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010108 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*0201 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- Intron 7 | Exon 8| 3' UTR gDNA 2891 | | | | | J*01010101 ACTGTGAGTG ATATGAATTT GTTCATGAAT ATTTTTTCTA TAG | TGTGA | GA CAGCTGCCTT GTGTGGGACT GAGAGGCAAG ATTTGTTCAT GCCTTCCCTT J*01010102 ---------- ---------- ---------- ---------- --- | ----- | -- ---------- ---------- ---------- ---------- ---------- J*01010103 ---------- ---------- ---------- ---------- --- | ----- | -- ---------- ---------- ---------- ---------- ---------- J*01010104 ---------- ---------- ---------- ---------- --- | ----- | -- ---------- ---------- ---------- ---------- ---------- J*01010105 ---------- ---------- ---------- ---------- --- | ----- | -- ---------- ---------- ---------- ---------- ---------- J*01010106 ---------- ---------- ---------- ---------- --- | ----- | -- ---------- ---------- ---------- ---------- ---------- J*01010107 ---------- ---------- ---------- ---------- --- | ----- | -- ---------- ---------- ---------- ---------- ---------- J*01010108 ---------- ---------- ---------- ---------- --- | ----- | -- ---------- ---------- ---------- ---------- ---------- J*0201 ---------- ---------- ---------- ---------- --- | ----- | -- ---------- ---------- ---------- ---------- ---------- gDNA 2995 | J*01010101 TGTGACTTCA AGAACCCTGA CTTCTCTTTC TGCAAAGGCA TCTGAATGTG TCTGTGTCCC TATAGGCATA ATGTGAGGTG GTGGGGAGAC CAGCCCACAC J*01010102 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010103 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010104 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010105 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010106 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010107 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010108 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*0201 ---------- ---------- ---------- ---------- ---------- ---------- -------*** ********** ********** ********** gDNA 3095 | J*01010101 CCGTGTCCAC CATGACCCTG TTCCCCACAC TGACCTACAT TCCTTCCCCG ATCACCTTTC CTGTTCCAGA GAAGTGGTGC TGGGATGTCT CCATCTCTGT J*01010102 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010103 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010104 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010105 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010106 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010107 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*01010108 ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- J*0201 ********** ********** ********** ********** ********** ********** ********** ********** ********** ********** gDNA 3195 | J*01010101 CTCAACTTCA TGGTGCACTG AGCTGTAACT TCTTACTTCC CTATTAAAA J*01010102 ---------- ---------- ---------- ---------- --------- J*01010103 ---------- ---------- ---------- ---------- --------- J*01010104 ---------- ---------- ---------- ---------- --------- J*01010105 ---------- ---------- ---------- ---------- --------- J*01010106 ---------- ---------- ---------- ---------- --------- J*01010107 ---------- ---------- ---------- ---------- --------- J*01010108 ---------- ---------- ---------- ---------- --------- J*0201 ********** ********** ********** ********** *********