HLADB-2.28.0-January 2010 HLA-F Nucleotide Sequence Alignments Sequences Aligned: 15 January 2010 Steven G. E. Marsh, Anthony Nolan Research Institute. Nuc. Pos. 30 60 Prot. Pos. -20 -10 -1 1 F*01010101 ATG GCG CCC CGA AGC CTC CTC CTG CTG CTC TCA GGG GCC CTG GCC CTG ACC GAT ACT TGG GCG G | GC TCC CAC TCC F*01010102 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- F*01010103 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- F*01010104 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- F*01010105 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- F*01010106 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- F*01010107 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- F*01010108 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- F*01010201 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --A - | -- --- --- --- F*01010202 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --A - | -- --- --- --- F*01010203 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --A - | -- --- --- --- F*01010204 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --A - | -- --- --- --- F*01010205 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --A - | -- --- --- --- F*01010301 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- F*01010302 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- F*01010303 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- F*01010304 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- F*0102 --- --- --- --- --- --- --- --- --- --- --- --- -T- --- --- --- --- --- --- --- --- - | -- --- --- --- F*01030101 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- F*01030102 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- F*0104 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- Nuc. Pos. 90 120 150 Prot. Pos. 10 20 F*01010101 TTG AGG TAT TTC AGC ACC GCT GTG TCG CGG CCC GGC CGC GGG GAG CCC CGC TAC ATC GCC GTG GAG TAC GTA GAC F*01010102 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010103 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010104 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010105 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010106 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010107 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010108 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010201 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010202 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010203 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010204 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010205 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010301 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010302 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010303 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010304 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*0102 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01030101 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01030102 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*0104 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- Nuc. Pos. 180 210 Prot. Pos. 30 40 50 F*01010101 GAC ACG CAA TTC CTG CGG TTC GAC AGC GAC GCC GCG ATT CCG AGG ATG GAG CCG CGG GAG CCG TGG GTG GAG CAA F*01010102 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010103 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010104 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010105 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010106 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010107 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010108 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010201 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010202 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010203 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010204 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010205 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010301 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010302 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010303 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010304 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*0102 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01030101 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01030102 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*0104 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- -A- --- --- --- --- Nuc. Pos. 240 270 300 Prot. Pos. 60 70 F*01010101 GAG GGG CCG CAG TAT TGG GAG TGG ACC ACA GGG TAC GCC AAG GCC AAC GCA CAG ACT GAC CGA GTG GCC CTG AGG F*01010102 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010103 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010104 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010105 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010106 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010107 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010108 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010201 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010202 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010203 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010204 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010205 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010301 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010302 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010303 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010304 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*0102 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01030101 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01030102 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*0104 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- Nuc. Pos. 330 360 Prot. Pos. 80 90 100 F*01010101 AAC CTG CTC CGC CGC TAC AAC CAG AGC GAG GCT G | GG TCT CAC ACC CTC CAG GGA ATG AAT GGC TGC GAC ATG GGG F*01010102 --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010103 --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010104 --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010105 --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010106 --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010107 --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010108 --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010201 --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010202 --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010203 --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010204 --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010205 --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010301 --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010302 --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010303 --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010304 --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- --- --- --- F*0102 --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01030101 --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01030102 --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- --- --- --- F*0104 --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- --- --- --- Nuc. Pos. 390 420 450 Prot. Pos. 110 120 F*01010101 CCC GAC GGA CGC CTC CTC CGC GGG TAT CAC CAG CAC GCG TAC GAC GGC AAG GAT TAC ATC TCC CTG AAC GAG GAC F*01010102 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010103 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010104 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010105 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010106 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010107 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010108 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010201 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010202 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010203 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010204 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010205 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010301 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010302 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010303 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010304 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*0102 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01030101 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01030102 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*0104 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- Nuc. Pos. 480 510 Prot. Pos. 130 140 150 F*01010101 CTG CGC TCC TGG ACC GCG GCG GAC ACC GTG GCT CAG ATC ACC CAG CGC TTC TAT GAG GCA GAG GAA TAT GCA GAG F*01010102 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010103 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010104 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010105 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010106 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010107 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010108 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010201 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010202 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010203 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010204 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010205 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010301 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010302 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010303 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010304 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*0102 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01030101 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01030102 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*0104 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- Nuc. Pos. 540 570 600 Prot. Pos. 160 170 F*01010101 GAG TTC AGG ACC TAC CTG GAG GGC GAG TGC CTG GAG TTG CTC CGC AGA TAC TTG GAG AAT GGG AAG GAG ACG CTA F*01010102 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010103 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010104 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010105 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010106 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010107 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010108 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010201 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010202 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010203 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010204 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010205 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010301 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010302 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010303 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010304 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*0102 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01030101 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01030102 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*0104 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- Nuc. Pos. 630 660 Prot. Pos. 180 190 200 F*01010101 CAG CGC GCA G | AT CCT CCA AAG GCA CAC GTT GCC CAC CAC CCC ATC TCT GAC CAT GAG GCC ACC CTG AGG TGC TGG F*01010102 --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010103 --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010104 --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010105 --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010106 --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010107 --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010108 --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010201 --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010202 --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010203 --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010204 --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010205 --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010301 --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010302 --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010303 --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010304 --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*0102 --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01030101 --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01030102 --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*0104 --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- Nuc. Pos. 690 720 750 Prot. Pos. 210 220 F*01010101 GCC CTG GGC TTC TAC CCT GCG GAG ATC ACG CTG ACC TGG CAG CGG GAT GGG GAG GAA CAG ACC CAG GAC ACA GAG F*01010102 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010103 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010104 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010105 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010106 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010107 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010108 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010201 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010202 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010203 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010204 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010205 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010301 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010302 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010303 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010304 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*0102 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01030101 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01030102 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*0104 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- Nuc. Pos. 780 810 Prot. Pos. 230 240 250 F*01010101 CTT GTG GAG ACC AGG CCT GCA GGG GAT GGA ACC TTC CAG AAG TGG GCC GCT GTG GTG GTG CCT TCT GGA GAG GAA F*01010102 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010103 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010104 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010105 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010106 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010107 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010108 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010201 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010202 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010203 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010204 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010205 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010301 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010302 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010303 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010304 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*0102 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01030101 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- C-- --- --- --- F*01030102 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- C-- --- --- --- F*0104 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- Nuc. Pos. 840 870 900 Prot. Pos. 260 270 F*01010101 CAG AGA TAC ACA TGC CAT GTG CAG CAC GAG GGG CTG CCC CAG CCC CTC ATC CTG AGA TGG G | AG CAG TCT CCC CAG F*01010102 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- F*01010103 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- F*01010104 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- F*01010105 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- F*01010106 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- F*01010107 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- F*01010108 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- F*01010201 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- F*01010202 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- F*01010203 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- F*01010204 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- F*01010205 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- F*01010301 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- F*01010302 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- F*01010303 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- F*01010304 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- F*0102 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- F*01030101 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- F*01030102 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- F*0104 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- Nuc. Pos. 930 960 Prot. Pos. 280 290 300 F*01010101 CCC ACC ATC CCC ATC GTG GGC ATC GTT GCT GGC CTT GTT GTC CTT GGA GCT GTG GTC ACT GGA GCT GTG GTC GCT F*01010102 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010103 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010104 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010105 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010106 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010107 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010108 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010201 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010202 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010203 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010204 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010205 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010301 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010302 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010303 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01010304 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*0102 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01030101 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*01030102 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F*0104 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- Nuc. Pos. 990 1020 1050 Prot. Pos. 310 320 F*01010101 GCT GTG ATG TGG AGG AAG AAG AGC TCA G | AT AGA AAC AGA GGG AGC TAC TCT CAG GCT GCA G | TC ACT GAC AGT GCC F*01010102 --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- F*01010103 --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- F*01010104 --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- F*01010105 --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- F*01010106 --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- F*01010107 --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- F*01010108 --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- F*01010201 --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- F*01010202 --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- F*01010203 --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- F*01010204 --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- F*01010205 --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- F*01010301 --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --T F*01010302 --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --T F*01010303 --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --T F*01010304 --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --T F*0102 --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --T F*01030101 --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- F*01030102 --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- F*0104 --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --T Nuc. Pos. 1080 Prot. Pos. 330 340 F*01010101 CAG GGC TCT GGG GTG TCT CTC ACA GCT AAT AAA G | TG TGA F*01010102 --- --- --- --- --- --- --- --- --- --- --- - | -- --- F*01010103 --- --- --- --- --- --- --- --- --- --- --- - | -- --- F*01010104 --- --- --- --- --- --- --- --- --- --- --- - | -- --- F*01010105 --- --- --- --- --- --- --- --- --- --- --- - | -- --- F*01010106 --- --- --- --- --- --- --- --- --- --- --- - | -- --- F*01010107 --- --- --- --- --- --- --- --- --- --- --- - | -- --- F*01010108 --- --- --- --- --- --- --- --- --- --- --- - | -- --- F*01010201 --- --- --- --- --- --- --- --- --- --- --- - | -- --- F*01010202 --- --- --- --- --- --- --- --- --- --- --- - | -- --- F*01010203 --- --- --- --- --- --- --- --- --- --- --- - | -- --- F*01010204 --- --- --- --- --- --- --- --- --- --- --- - | -- --- F*01010205 --- --- --- --- --- --- --- --- --- --- --- - | -- --- F*01010301 --- --- --- --- --- --- --- --- --- --- --- - | -- --- F*01010302 --- --- --- --- --- --- --- --- --- --- --- - | -- --- F*01010303 --- --- --- --- --- --- --- --- --- --- --- - | -- --- F*01010304 --- --- --- --- --- --- --- --- --- --- --- - | -- --- F*0102 --- --- --- --- --- --- --- --- --- --- --- - | -- --- F*01030101 --- --- --- --- --- --- --- --- --- --- --- - | -- --- F*01030102 --- --- --- --- --- --- --- --- --- --- --- - | -- --- F*0104 --- --- --- --- --- --- --- --- --- --- --- - | -- ---