HLA-E Nucleotide Sequence Alignments IMGT/HLA Release: 3.7.0 Sequences Aligned: 12 January 2012 Steven GE Marsh, Anthony Nolan Research Institute. Please see http://hla.alleles.org/terms.html for terms of use. cDNA 1 AA codon -21 | E*01:01:01:01 ATG GTA GAT GGA ACC CTC CTT TTA CTC CTC TCG GAG GCC CTG GCC CTT ACC CAG ACC TGG GCG G|GC TCC CAC TCC E*01:01:01:02 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- -|-- --- --- --- E*01:01:01:03 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- -|-- --- --- --- E*01:03:01:01 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- -|-- --- --- --- E*01:03:01:02 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- -|-- --- --- --- E*01:03:02:01 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- -|-- --- --- --- E*01:03:02:02 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- -|-- --- --- --- E*01:03:03 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- -|-- --- --- --- E*01:03:04 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- -|-- --- --- --- E*01:04 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *|** *** *** *** cDNA 76 AA codon 5 | E*01:01:01:01 TTG AAG TAT TTC CAC ACT TCC GTG TCC CGG CCC GGC CGC GGG GAG CCC CGC TTC ATC TCT GTG GGC TAC GTG GAC E*01:01:01:02 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:01:01:03 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:01:01 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:01:02 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:02:01 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:02:02 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:03 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:04 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:04 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** cDNA 151 AA codon 30 | E*01:01:01:01 GAC ACC CAG TTC GTG CGC TTC GAC AAC GAC GCC GCG AGT CCG AGG ATG GTG CCG CGG GCG CCG TGG ATG GAG CAG E*01:01:01:02 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:01:01:03 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:01:01 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:01:02 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:02:01 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:02:02 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:03 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:04 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:04 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** cDNA 226 AA codon 55 | E*01:01:01:01 GAG GGG TCA GAG TAT TGG GAC CGG GAG ACA CGG AGC GCC AGG GAC ACC GCA CAG ATT TTC CGA GTG AAC CTG CGG E*01:01:01:02 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:01:01:03 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:01:01 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:01:02 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:02:01 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --T --- --- E*01:03:02:02 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --T --- --- E*01:03:03 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --T --- --- E*01:03:04 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --T --- --- E*01:04 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** cDNA 301 AA codon 80 | E*01:01:01:01 ACG CTG CGC GGC TAC TAC AAT CAG AGC GAG GCC G|GG TCT CAC ACC CTG CAG TGG ATG CAT GGC TGC GAG CTG GGG E*01:01:01:02 --- --- --- --- --- --- --- --- --- --- --- -|-- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:01:01:03 --- --- --- --- --- --- --- --- --- --- --- -|-- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:01:01 --- --- --- --- --- --- --- --- --- --- --- -|-- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:01:02 --- --- --- --- --- --- --- --- --- --- --- -|-- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:02:01 --- --- --- --- --- --- --- --- --- --- --- -|-- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:02:02 --- --- --- --- --- --- --- --- --- --- --- -|-- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:03 --- --- --- --- --- --- --- --- --- --- --- -|-- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:04 --- --- --- --- --- --- --- --- --- --- --- -|-- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:04 *** *** *** *** *** *** *** *** *** *** *** *|-- --- --- --- --- --- --- --- --- --- --- --- --- --- cDNA 376 AA codon 105 | E*01:01:01:01 CCC GAC AGG CGC TTC CTC CGC GGG TAT GAA CAG TTC GCC TAC GAC GGC AAG GAT TAT CTC ACC CTG AAT GAG GAC E*01:01:01:02 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:01:01:03 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:01:01 --- --- G-- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:01:02 --- --- G-- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:02:01 --- --- G-- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:02:02 --- --- G-- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:03 --- --- G-- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:04 --- --- G-- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:04 --- --- G-- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- cDNA 451 AA codon 130 | E*01:01:01:01 CTG CGC TCC TGG ACC GCG GTG GAC ACG GCG GCT CAG ATC TCC GAG CAA AAG TCA AAT GAT GCC TCT GAG GCG GAG E*01:01:01:02 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:01:01:03 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:01:01 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:01:02 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:02:01 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:02:02 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:03 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --T --- --- --- --- E*01:03:04 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:04 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- cDNA 526 AA codon 155 | E*01:01:01:01 CAC CAG AGA GCC TAC CTG GAA GAC ACA TGC GTG GAG TGG CTC CAC AAA TAC CTG GAG AAG GGG AAG GAG ACG CTG E*01:01:01:02 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:01:01:03 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:01:01 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:01:02 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:02:01 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:02:02 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:03 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:04 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:04 --- --- G-- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- cDNA 601 AA codon 180 | E*01:01:01:01 CTT CAC CTG G|AG CCC CCA AAG ACA CAC GTG ACT CAC CAC CCC ATC TCT GAC CAT GAG GCC ACC CTG AGG TGC TGG E*01:01:01:02 --- --- --- -|-- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:01:01:03 --- --- --- -|-- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:01:01 --- --- --- -|-- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:01:02 --- --- --- -|-- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:02:01 --- --- --- -|-- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:02:02 --- --- --- -|-- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:03 --- --- --- -|-- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:04 --- --- --- -|-- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:04 --- --- --- *|** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** cDNA 676 AA codon 205 | E*01:01:01:01 GCC CTG GGC TTC TAC CCT GCG GAG ATC ACA CTG ACC TGG CAG CAG GAT GGG GAG GGC CAT ACC CAG GAC ACG GAG E*01:01:01:02 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:01:01:03 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:01:01 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:01:02 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:02:01 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:02:02 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:03 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:04 --- --- --- --- --- --- --A --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:04 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** cDNA 751 AA codon 230 | E*01:01:01:01 CTC GTG GAG ACC AGG CCT GCA GGG GAT GGA ACC TTC CAG AAG TGG GCA GCT GTG GTG GTG CCT TCT GGA GAG GAG E*01:01:01:02 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:01:01:03 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:01:01 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:01:02 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:02:01 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:02:02 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:03 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:04 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:04 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** cDNA 826 AA codon 255 | E*01:01:01:01 CAG AGA TAC ACG TGC CAT GTG CAG CAT GAG GGG CTA CCC GAG CCC GTC ACC CTG AGA TGG A|AG CCG GCT TCC CAG E*01:01:01:02 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- -|-- --- --- --- --- E*01:01:01:03 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- -|-- --- --- --- --- E*01:03:01:01 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- -|-- --- --- --- --- E*01:03:01:02 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- -|-- --- --- --- --- E*01:03:02:01 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- -|-- --- --- --- --- E*01:03:02:02 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- -|-- --- --- --- --- E*01:03:03 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- -|-- --- --- --- --- E*01:03:04 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- -|-- --- --- --- --- E*01:04 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *|** *** *** *** *** cDNA 901 AA codon 280 | E*01:01:01:01 CCC ACC ATC CCC ATC GTG GGC ATC ATT GCT GGC CTG GTT CTC CTT GGA TCT GTG GTC TCT GGA GCT GTG GTT GCT E*01:01:01:02 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:01:01:03 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:01:01 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:01:02 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:02:01 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:02:02 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:03 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:03:04 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- E*01:04 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** cDNA 976 AA codon 305 | E*01:01:01:01 GCT GTG ATA TGG AGG AAG AAG AGC TCA G|GT GGA AAA GGA GGG AGC TAC TCT AAG GCT GAG T|GG AGC GAC AGT GCC E*01:01:01:02 --- --- --- --- --- --- --- --- --- -|-- --- --- --- --- --- --- --- --- --- --- -|-- --- --- --- --- E*01:01:01:03 --- --- --- --- --- --- --- --- --- -|-- --- --- --- --- --- --- --- --- --- --- -|-- --- --- --- --- E*01:03:01:01 --- --- --- --- --- --- --- --- --- -|-- --- --- --- --- --- --- --- --- --- --- -|-- --- --- --- --- E*01:03:01:02 --- --- --- --- --- --- --- --- --- -|-- --- --- --- --- --- --- --- --- --- --- -|-- --- --- --- --- E*01:03:02:01 --- --- --- --- --- --- --- --- --- -|-- --- --- --- --- --- --- --- --- --- --- -|-- --- --- --- --- E*01:03:02:02 --- --- --- --- --- --- --- --- --- -|-- --- --- --- --- --- --- --- --- --- --- -|-- --- --- --- --- E*01:03:03 --- --- --- --- --- --- --- --- --- -|-- --- --- --- --- --- --- --- --- --- --- -|-- --- --- --- --- E*01:03:04 --- --- --- --- --- --- --- --- --- -|-- --- --- --- --- --- --- --- --- --- --- -|-- --- --- --- --- E*01:04 *** *** *** *** *** *** *** *** *** *|** *** *** *** *** *** *** *** *** *** *** *|** *** *** *** *** cDNA 1051 AA codon 330 | E*01:01:01:01 CAG GGG TCT GAG TCT CAC AGC TTG TAA E*01:01:01:02 --- --- --- --- --- --- --- --- --- E*01:01:01:03 --- --- --- --- --- --- --- --- --- E*01:03:01:01 --- --- --- --- --- --- --- --- --- E*01:03:01:02 --- --- --- --- --- --- --- --- --- E*01:03:02:01 --- --- --- --- --- --- --- --- --- E*01:03:02:02 --- --- --- --- --- --- --- --- --- E*01:03:03 --- --- --- --- --- --- --- --- --- E*01:03:04 --- --- --- --- --- --- --- --- --- E*01:04 *** *** *** *** *** *** *** *** *** Please see http://hla.alleles.org/terms.html for terms of use.