HLADB-2.28.0-January 2010 HLA-DPA1 Nucleotide Sequence Alignments Sequences Aligned: 15 January 2010 Steven G. E. Marsh, Anthony Nolan Research Institute. Nuc. Pos. 30 60 Prot. Pos. -30 -20 -10 DPA1*010301 ATG CGC CCT GAA GAC AGA ATG TTC CAT ATC AGA GCT GTG ATC TTG AGA GCC CTC TCC TTG GCT TTC CTG CTG AGT DPA1*010302 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*010303 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*010304 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0104 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0105 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*010601 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*010602 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0107 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0108 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0109 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0110 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*020101 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*020102 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*020103 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*020104 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*020105 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*020106 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*020201 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*020202 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*020203 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0203 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0204 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0301 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0302 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0303 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0401 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** Nuc. Pos. 90 120 150 Prot. Pos. -1 1 10 DPA1*010301 CTC CGA GGA GCT GGG GCC ATC AAG G | CG GAC CAT GTG TCA ACT TAT GCC GCG TTT GTA CAG ACG CAT AGA CCA ACA DPA1*010302 *** *** *** *** *** *** *** *** * | ** *** *** *** *** *** *** *** --- --- --- --- --- --- --- --- --- DPA1*010303 *** *** *** *** *** *** *** *** * | -- --- --- --- --- --- --- --- --- --- --- --- --C --- --- --- --- DPA1*010304 *** *** *** *** *** *** *** *** * | -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*0104 *** *** *** *** *** *** *** *** * | ** *** *** *** *** *** *** --- --- --- --- --- --- --- --- --- --- DPA1*0105 *** *** *** *** *** *** *** *** * | ** *** *** *** *** *** *** --- --- --- --- --- --- --- --- --- --- DPA1*010601 *** *** *** *** *** *** *** *** * | -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*010602 *** *** *** *** *** *** *** *** * | -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*0107 *** *** *** *** *** *** *** *** * | ** *** --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*0108 *** *** *** *** *** *** *** *** * | -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*0109 *** *** *** *** *** *** *** *** * | -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*0110 *** *** *** *** *** *** *** *** * | -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*020101 *** *** *** *** *** *** --- --- - | -- --- --- --- --- --- --- --- --- --- --- --- --C --- --- --- --- DPA1*020102 *** *** *** *** *** *** *** *** * | -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*020103 *** *** *** *** *** *** *** *** * | -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*020104 *** *** *** *** *** *** *** *** * | ** *** *** *** *** *** *** *** --- --- --- --A --C --- --- --- --- DPA1*020105 *** *** *** *** *** *** *** *** * | -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*020106 *** *** *** *** *** *** --- --- - | -- --- --- --- --- --- --- --- --- --- --- --- --C --- --- --- --- DPA1*020201 *** *** *** *** *** *** *** *** * | ** *** *** *** **- --- --- --- AT- --- --- --- --C --- --- --- --- DPA1*020202 *** *** *** *** *** *** *** *** * | -- --- --- --- --- --- --- --- AT- --- --- --- --C --- --- --- --- DPA1*020203 *** *** *** *** *** *** *** *** * | ** *** *-- --- --- --- --- --- AT- --- --- --- --C --- --- --- --- DPA1*0203 *** *** *** *** *** *** *** *** * | -- --- --- --- --- --- --- --- --- --- --- --- --C --- --- --- --- DPA1*0204 *** *** *** *** *** *** *** *** * | -- --- --- --- --- --- --- --- AT- --- --- --- --C --- --- --- --- DPA1*0301 *** *** *** *** *** *** *** *** * | ** *** *** *** *** *** *** --- AT- --- --- --- --C --- --- --- --- DPA1*0302 *** *** *** *** *** *** *** *** * | -- --- --- --- --- --- --- --- AT- --- --- --- --C --- --- --- --- DPA1*0303 *** *** *** *** *** *** *** *** * | -- --- --- --- --- --- --- --- AT- --- --- --- --C --- --- --- --- DPA1*0401 *** *** *** *** *** *** *** *** * | ** *** *** *** *** *** *** --- --- --- --- --- --- --- --- A-- --- Nuc. Pos. 180 210 Prot. Pos. 20 30 40 DPA1*010301 GGG GAG TTT ATG TTT GAA TTT GAT GAA GAT GAG ATG TTC TAT GTG GAT CTG GAC AAG AAG GAG ACC GTC TGG CAT DPA1*010302 --A --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*010303 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*010304 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*0104 --- --- --- --- --- --- --- --- --C --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*0105 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*010601 --- --- --- --- --- --- --- --- --- --- --- CA- --- --- --- --- --- --T --A --- --- --- --- --- --- DPA1*010602 --- --- --- --- --- --- --- --- --- --- --- CA- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*0107 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*0108 --- --- --- --- --- --- --- --- --C --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*0109 --- --- --- -C- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*0110 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --T --- DPA1*020101 --- --- --- --- --- --- --- --- --- --- --- CA- --- --- --- --- --- --T --A --- --- --- --- --- --- DPA1*020102 --- --- --- --- --- --- --- --- --- --- --- CA- --- --- --- --- --- --T --A --- --- --- --- --- --- DPA1*020103 --- --- --- --- --- --- --- --- --- --- --- CA- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*020104 --- --- --- --- --- --- --- --- --- --- --- CA- --- --- --- --- --- --T --A --- --- --- --- --- --- DPA1*020105 --A --- --- --- --- --- --- --- --- --- --- CA- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*020106 --- --- --- --- --- --- --- --- --- --- --- CA- --- --- --- --- --- --T --- --- --- --- --- --- --- DPA1*020201 --A --- --- --- --- --- --- --- --- --- --- CA- --- --- --- --- --- --T --- --- --- --- --- --- --- DPA1*020202 --A --- --- --- --- --- --- --- --- --- --- CA- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*020203 --- --- --- --- --- --- --- --- --- --- --- CA- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*0203 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*0204 --A --- --- --- --- --- --- --- --- --- --- CA- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*0301 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*0302 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*0303 --- --- --- --- --- --- --- --- --C --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*0401 --A --- --- --- --- --G --- --- --T --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- Nuc. Pos. 240 270 300 Prot. Pos. 50 60 DPA1*010301 CTG GAG GAG TTT GGC CAA GCC TTT TCC TTT GAG GCT CAG GGC GGG CTG GCT AAC ATT GCT ATA TTG AAC AAC AAC DPA1*010302 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*010303 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*010304 --- --- --- --- --- --- --- --- --- --- --- --- --- --T --- --- --- --- --- --- --- --- --- --- --- DPA1*0104 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*0105 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*010601 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*010602 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*0107 --- --- --- --- --- --- A-- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*0108 --- --- --- --- --- -G- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*0109 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*0110 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*020101 --- --- --- --- --- -G- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*020102 --- --- --- --- --- -G- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*020103 --- --- --- --- --- -G- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*020104 --- --- --- --- --- -G- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*020105 --- --- --- --- --- -G- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*020106 --- --- --- --- --- -G- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*020201 --- --- --- --- --- -G- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*020202 --- --- --- --- --- -G- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*020203 --- --- --- --- --- -G- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*0203 --- --- --- --- --- -G- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*0204 --- --- --- --- --- -G- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- G-- DPA1*0301 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- -C- --- --- --- DPA1*0302 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*0303 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- -C- --- --- --- DPA1*0401 --- --- --- --- --- -G- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- Nuc. Pos. 330 360 Prot. Pos. 70 80 90 DPA1*010301 TTG AAT ACC TTG ATC CAG CGT TCC AAC CAC ACT CAG GCC ACC AAC G | AT CCC CCT GAG GTG ACC GTG TTT CCC AAG DPA1*010302 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- * | ** *** *** *** *** *** *** *** *** *** DPA1*010303 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- - | ** *** *** *** *** *** *** *** *** *** DPA1*010304 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- - | ** *** *** *** *** *** *** *** *** *** DPA1*0104 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- --- --- --- --- --- DPA1*0105 --- --- --- --- --- --- --- --- --- --- --- --- --- G-- --T * | ** *** *** *** *** *** *** *** *** *** DPA1*010601 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- - | ** *** *** *** *** *** *** *** *** *** DPA1*010602 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- - | ** *** *** *** *** *** *** *** *** *** DPA1*0107 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- - | ** *** *** *** *** *** *** *** *** *** DPA1*0108 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- - | ** *** *** *** *** *** *** *** *** *** DPA1*0109 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- - | ** *** *** *** *** *** *** *** *** *** DPA1*0110 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- - | ** *** *** *** *** *** *** *** *** *** DPA1*020101 --- --- --- --- --- --- --- --- --- --- --- --- --- G-- --T - | -- --- --- --- --- --- --- --- --- --- DPA1*020102 --- --- --- --- --- --- --- --- --- --- --- --- --- G-- --T - | ** *** *** *** *** *** *** *** *** *** DPA1*020103 --- --- --- --- --- --- --- --- --- --- --- --- --- G-- --T - | ** *** *** *** *** *** *** *** *** *** DPA1*020104 --- --- --- --- --- --- --- --- --- --- --- --- --- G-- --T * | ** *** *** *** *** *** *** *** *** *** DPA1*020105 --- --- --- --- --- --- --- --- --- --- --- --- --- G-- --T - | ** *** *** *** *** *** *** *** *** *** DPA1*020106 --- --- --- --- --- --- --- --- --- --- --- --- --- G-- --T - | -- --* *** *** *** *** *** *** *** *** DPA1*020201 --- --- --- --- --- --- --- --- --- --- --- --- --- G-- --T - | -- --- --- --- --- --- --- --- --- --- DPA1*020202 --- --- --- --- --- --- --- --- --- --- --- --- --- G-- --T - | -- --- --- --- --- --G --- --- --- --- DPA1*020203 --- --- --- --- --- --- --- --- --- --- --- --- --- G-- --T - | ** *** *** *** *** *** *** *** *** *** DPA1*0203 --- --- --- --- --- --- --- --- --- --- --- --- --- G-- --T * | ** *** *** *** *** *** *** *** *** *** DPA1*0204 --- --- --- --- --- --- --- --- --- --- --- --- --- G-- --T - | ** *** *** *** *** *** *** *** *** *** DPA1*0301 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- --- --- --- --- --- DPA1*0302 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- * | ** *** *** *** *** *** *** *** *** *** DPA1*0303 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- - | ** *** *** *** *** *** *** *** *** *** DPA1*0401 --- --- -T- GCT --- --- --- --- --- --- --- --- --- G-- --T - | -- --- --- --- --- --- --- --- --- --- Nuc. Pos. 390 420 450 Prot. Pos. 100 110 DPA1*010301 GAG CCT GTG GAG CTG GGC CAG CCC AAC ACC CTC ATC TGC CAC ATT GAC AAG TTC TTC CCA CCA GTG CTC AAC GTC DPA1*010302 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*010303 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*010304 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0104 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*0105 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*010601 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*010602 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0107 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0108 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0109 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0110 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*020101 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- -G- --- --- --- --- --- --- --- --- DPA1*020102 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*020103 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*020104 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*020105 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*020106 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*020201 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- -G- --- --- --- --- --- --- --- --- DPA1*020202 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- -G- --- --- --- --- --- --- --T --- DPA1*020203 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0203 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0204 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0301 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*0302 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0303 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0401 --- G-- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- Nuc. Pos. 480 510 Prot. Pos. 120 130 140 DPA1*010301 ACG TGG CTG TGC AAC GGG GAG CTG GTC ACT GAG GGT GTC GCT GAG AGC CTC TTC CTG CCC AGA ACA GAT TAC AGC DPA1*010302 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*010303 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*010304 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0104 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*0105 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*010601 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*010602 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0107 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0108 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0109 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0110 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*020101 --A --- --- --- --T --- --- -CA --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*020102 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*020103 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*020104 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*020105 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*020106 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*020201 --A --- --- --- --T --- --- -CA --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*020202 --A --- --- --- --T --- --- -C- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*020203 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0203 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0204 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0301 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*0302 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0303 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0401 --A --- --- --- --T --- --- -CA --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- Nuc. Pos. 540 570 600 Prot. Pos. 150 160 DPA1*010301 TTC CAC AAG TTC CAT TAC CTG ACC TTT GTG CCC TCA GCA GAG GAC TTC TAT GAC TGC AGG GTG GAG CAC TGG GGC DPA1*010302 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*010303 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*010304 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0104 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*0105 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*010601 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*010602 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0107 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0108 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0109 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0110 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*020101 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- G-- --- --- --- --- --- --- --- --- --- DPA1*020102 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*020103 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*020104 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*020105 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*020106 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*020201 --- --- --- --- --- --- --- --- --- --A --- --- --- --- --- G-- --- --- --- --- --- --- --- --- --- DPA1*020202 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- G-- --- --- --- --- --- --- --- --- --- DPA1*020203 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0203 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0204 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0301 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*0302 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0303 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0401 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- G-- --- --- --- --- --- --- --- --- --- Nuc. Pos. 630 660 Prot. Pos. 170 180 190 DPA1*010301 TTG GAC CAG CCG CTC CTC AAG CAC TGG G | AG GCC CAA GAG CCA ATC CAG ATG CCT GAG ACA ACG GAG ACT GTG CTC DPA1*010302 *** *** *** *** *** *** *** *** *** * | ** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*010303 *** *** *** *** *** *** *** *** *** * | ** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*010304 *** *** *** *** *** *** *** *** *** * | ** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0104 --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*0105 *** *** *** *** *** *** *** *** *** * | ** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*010601 *** *** *** *** *** *** *** *** *** * | ** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*010602 *** *** *** *** *** *** *** *** *** * | ** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0107 *** *** *** *** *** *** *** *** *** * | ** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0108 *** *** *** *** *** *** *** *** *** * | ** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0109 *** *** *** *** *** *** *** *** *** * | ** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0110 *** *** *** *** *** *** *** *** *** * | ** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*020101 --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*020102 *** *** *** *** *** *** *** *** *** * | ** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*020103 *** *** *** *** *** *** *** *** *** * | ** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*020104 *** *** *** *** *** *** *** *** *** * | ** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*020105 *** *** *** *** *** *** *** *** *** * | ** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*020106 *** *** *** *** *** *** *** *** *** * | ** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*020201 --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*020202 --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*020203 *** *** *** *** *** *** *** *** *** * | ** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0203 *** *** *** *** *** *** *** *** *** * | ** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0204 *** *** *** *** *** *** *** *** *** * | ** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0301 --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*0302 *** *** *** *** *** *** *** *** *** * | ** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0303 *** *** *** *** *** *** *** *** *** * | ** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0401 --- --- --- --- --- --- --- --- --- - | -- --- --- --- --- --- --- --- --- --- --- G-- --- --- --- --- Nuc. Pos. 690 720 750 Prot. Pos. 200 210 DPA1*010301 TGT GCC CTG GGC CTG GTG CTG GGC CTA GTC GGC ATC ATC GTG GGC ACC GTC CTC ATC ATA AAG TCT CTG CGT TCT DPA1*010302 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*010303 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*010304 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0104 --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*0105 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*010601 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*010602 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0107 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0108 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0109 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0110 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*020101 --- --- --- --- --- --- --- --- --- --G --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*020102 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*020103 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*020104 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*020105 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*020106 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*020201 --- --- --- --- --- --- --- --- --- --G --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*020202 --- --- --- --- --- --- --- --- --- --G --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*020203 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0203 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0204 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0301 --- --- --- --- --- --- --- --- --- --G --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- DPA1*0302 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0303 *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** *** DPA1*0401 --- --- --- --- --- --- --- --- --- --G --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- Nuc. Pos. 780 Prot. Pos. 220 230 DPA1*010301 GGC CAT GAC CCC CGG GCC CAG GGG ACC CTG TGA DPA1*010302 *** *** *** *** *** *** *** *** *** *** *** DPA1*010303 *** *** *** *** *** *** *** *** *** *** *** DPA1*010304 *** *** *** *** *** *** *** *** *** *** *** DPA1*0104 --- --- --- --- --- --- --- --- --- --- --- DPA1*0105 *** *** *** *** *** *** *** *** *** *** *** DPA1*010601 *** *** *** *** *** *** *** *** *** *** *** DPA1*010602 *** *** *** *** *** *** *** *** *** *** *** DPA1*0107 *** *** *** *** *** *** *** *** *** *** *** DPA1*0108 *** *** *** *** *** *** *** *** *** *** *** DPA1*0109 *** *** *** *** *** *** *** *** *** *** *** DPA1*0110 *** *** *** *** *** *** *** *** *** *** *** DPA1*020101 --- --- --- --- --- --- --- --- C-- --- --- DPA1*020102 *** *** *** *** *** *** *** *** *** *** *** DPA1*020103 *** *** *** *** *** *** *** *** *** *** *** DPA1*020104 *** *** *** *** *** *** *** *** *** *** *** DPA1*020105 *** *** *** *** *** *** *** *** *** *** *** DPA1*020106 *** *** *** *** *** *** *** *** *** *** *** DPA1*020201 --- --- --- --- --- --- --- --- C-- --- --- DPA1*020202 --- --- --- --- --- --- --- --- C-- --- --- DPA1*020203 *** *** *** *** *** *** *** *** *** *** *** DPA1*0203 *** *** *** *** *** *** *** *** *** *** *** DPA1*0204 *** *** *** *** *** *** *** *** *** *** *** DPA1*0301 --- --- --- --- --- --- --- --- --- --- --- DPA1*0302 *** *** *** *** *** *** *** *** *** *** *** DPA1*0303 *** *** *** *** *** *** *** *** *** *** *** DPA1*0401 --- --- --- --- --- --- --- --- C-- --- ---